Variant report

Variant	rs10204648
Chromosome Location	chr2:86109746-86109747
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:86070509..86072865-chr2:86108197..86110713,2	K562	blood:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10865480	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11127008	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11127009	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12478916	0.83[AMR][1000 genomes]
rs1878905	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4832016	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4832210	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6547636	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6547640	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6720161	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6750686	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6751743	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7587003	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]

No data

Chromatin state (count:80 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:86075400-86114000	Weak transcription	Aorta	Aorta
2	chr2:86081000-86112400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr2:86086800-86113000	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr2:86088600-86111600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr2:86090600-86110600	Weak transcription	Fetal Muscle Trunk	muscle
6	chr2:86093400-86112400	Weak transcription	Colonic Mucosa	Colon
7	chr2:86093600-86111600	Weak transcription	Colon Smooth Muscle	Colon
8	chr2:86093800-86113000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr2:86100200-86111800	Weak transcription	K562	blood
10	chr2:86101200-86111600	Weak transcription	NHDF-Ad	bronchial
11	chr2:86102800-86115200	Weak transcription	Small Intestine	intestine
12	chr2:86103600-86111800	Weak transcription	Fetal Muscle Leg	muscle
13	chr2:86104200-86112400	Weak transcription	Monocytes-CD14+_RO01746	blood
14	chr2:86104600-86112000	Weak transcription	Stomach Mucosa	stomach
15	chr2:86104800-86113400	Weak transcription	Pancreatic Islets	Pancreatic Islet
16	chr2:86105400-86112400	Weak transcription	Ovary	ovary
17	chr2:86106200-86112200	Weak transcription	Muscle Satellite Cultured Cells	--
18	chr2:86106200-86112200	Weak transcription	Liver	Liver
19	chr2:86106400-86112200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr2:86106400-86112400	Weak transcription	Rectal Mucosa Donor 31	rectum
21	chr2:86106400-86112400	Weak transcription	NH-A	brain
22	chr2:86106400-86113800	Weak transcription	Pancreas	Pancrea
23	chr2:86106400-86113800	Weak transcription	Right Atrium	heart
24	chr2:86106400-86115200	Weak transcription	Gastric	stomach
25	chr2:86106600-86111600	Weak transcription	Skeletal Muscle Female	skeletal muscle
26	chr2:86106600-86111800	Weak transcription	Duodenum Mucosa	Duodenum
27	chr2:86106600-86113200	Weak transcription	Sigmoid Colon	Sigmoid Colon
28	chr2:86106800-86110600	Weak transcription	Psoas Muscle	Psoas
29	chr2:86106800-86112400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
30	chr2:86106800-86112400	Weak transcription	Spleen	Spleen
31	chr2:86107000-86111800	Weak transcription	Osteobl	bone
32	chr2:86107000-86113400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
33	chr2:86107200-86110600	Weak transcription	Adipose Nuclei	Adipose
34	chr2:86107200-86110600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
35	chr2:86107200-86111400	Weak transcription	Primary T cells from cord blood	blood
36	chr2:86107200-86112400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
37	chr2:86107400-86110800	Weak transcription	Brain Inferior Temporal Lobe	brain
38	chr2:86107400-86111600	Weak transcription	Primary T helper cells PMA-I stimulated	--
39	chr2:86107400-86111800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr2:86107400-86112000	Weak transcription	Primary hematopoietic stem cells	blood
41	chr2:86107400-86112000	Weak transcription	Brain Cingulate Gyrus	brain
42	chr2:86107400-86112400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
43	chr2:86107400-86113000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
44	chr2:86107600-86110000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
45	chr2:86107600-86110000	Weak transcription	Brain Anterior Caudate	brain
46	chr2:86107600-86111000	Weak transcription	Brain Substantia Nigra	brain
47	chr2:86107600-86111400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
48	chr2:86107600-86111600	Weak transcription	Brain Angular Gyrus	brain
49	chr2:86107600-86111800	Weak transcription	Primary T helper cells fromperipheralblood	blood
50	chr2:86107600-86112400	Weak transcription	Duodenum Smooth Muscle	Duodenum

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