The 2.0 version of rSNPBase

Variant report

Variant rs1878905
Chromosome Location chr2:86111688-86111689
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:86 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr2:86075400-86114000 Weak transcription Aorta Aorta
2 chr2:86081000-86112400 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
3 chr2:86086800-86113000 Weak transcription Rectal Mucosa Donor 29 rectum
4 chr2:86093400-86112400 Weak transcription Colonic Mucosa Colon
5 chr2:86093800-86113000 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
6 chr2:86100200-86111800 Weak transcription K562 blood
7 chr2:86102800-86115200 Weak transcription Small Intestine intestine
8 chr2:86103600-86111800 Weak transcription Fetal Muscle Leg muscle
9 chr2:86104200-86112400 Weak transcription Monocytes-CD14+_RO01746 blood
10 chr2:86104600-86112000 Weak transcription Stomach Mucosa stomach
11 chr2:86104800-86113400 Weak transcription Pancreatic Islets Pancreatic Islet
12 chr2:86105400-86112400 Weak transcription Ovary ovary
13 chr2:86106200-86112200 Weak transcription Muscle Satellite Cultured Cells --
14 chr2:86106200-86112200 Weak transcription Liver Liver
15 chr2:86106400-86112200 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
16 chr2:86106400-86112400 Weak transcription Rectal Mucosa Donor 31 rectum
17 chr2:86106400-86112400 Weak transcription NH-A brain
18 chr2:86106400-86113800 Weak transcription Pancreas Pancrea
19 chr2:86106400-86113800 Weak transcription Right Atrium heart
20 chr2:86106400-86115200 Weak transcription Gastric stomach
21 chr2:86106600-86111800 Weak transcription Duodenum Mucosa Duodenum
22 chr2:86106600-86113200 Weak transcription Sigmoid Colon Sigmoid Colon
23 chr2:86106800-86112400 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
24 chr2:86106800-86112400 Weak transcription Spleen Spleen
25 chr2:86107000-86111800 Weak transcription Osteobl bone
26 chr2:86107000-86113400 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
27 chr2:86107200-86112400 Weak transcription Primary T helper 17 cells PMA-I stimulated --
28 chr2:86107400-86111800 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
29 chr2:86107400-86112000 Weak transcription Primary hematopoietic stem cells blood
30 chr2:86107400-86112000 Weak transcription Brain Cingulate Gyrus brain
31 chr2:86107400-86112400 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
32 chr2:86107400-86113000 Weak transcription Primary T killer memory cells from peripheral blood blood
33 chr2:86107600-86111800 Weak transcription Primary T helper cells fromperipheralblood blood
34 chr2:86107600-86112400 Weak transcription Duodenum Smooth Muscle Duodenum
35 chr2:86107800-86113600 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
36 chr2:86108200-86111800 ZNF genes & repeats hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
37 chr2:86108200-86112400 Weak transcription Primary Natural Killer cells fromperipheralblood blood
38 chr2:86108800-86112200 Weak transcription Primary T cells fromperipheralblood blood
39 chr2:86109600-86111800 Weak transcription Placenta Placenta
40 chr2:86109600-86113200 Weak transcription Primary T regulatory cells fromperipheralblood blood
41 chr2:86109600-86113200 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
42 chr2:86109600-86113400 Weak transcription Cortex derived primary cultured neurospheres brain
43 chr2:86109600-86113800 Weak transcription Fetal Stomach stomach
44 chr2:86109800-86112400 Weak transcription HMEC breast
45 chr2:86109800-86113000 Weak transcription NHEK skin
46 chr2:86110000-86113000 Enhancers Brain Anterior Caudate brain
47 chr2:86110200-86112200 Weak transcription A549 lung
48 chr2:86110800-86113200 Enhancers Brain Inferior Temporal Lobe brain
49 chr2:86111000-86111800 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
50 chr2:86111000-86112400 Strong transcription Foreskin Keratinocyte Primary Cells skin02 Skin

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Last update: Aug 31, 2015