Variant report

Variant	rs62147537
Chromosome Location	chr2:86087159-86087160
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:86084824..86090316-chr2:86093337..86098199,7	K562	blood:
2	chr2:86086188..86089689-chr2:86114407..86116983,3	K562	blood:

Variant related genes	Relation type
ENSG00000115525	Chromatin interaction
ENSG00000232504	Chromatin interaction

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10496320	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10865480	0.88[ASN][1000 genomes]
rs11127003	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11127004	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11127006	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11127007	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11127008	0.94[ASN][1000 genomes]
rs11127009	0.94[ASN][1000 genomes]
rs11694145	0.86[AMR][1000 genomes]
rs12614498	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12618873	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12622987	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12990400	0.85[AMR][1000 genomes]
rs13014421	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13014890	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13016226	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13033743	0.92[AMR][1000 genomes]
rs17026675	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1878905	0.94[ASN][1000 genomes]
rs2280312	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3770097	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3810821	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4832016	0.94[ASN][1000 genomes]
rs4832210	0.96[ASN][1000 genomes]
rs56049132	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56083339	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62147538	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62147540	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6547636	0.94[ASN][1000 genomes]
rs6547640	0.94[ASN][1000 genomes]
rs6720161	0.94[ASN][1000 genomes]
rs6750686	0.94[ASN][1000 genomes]
rs6751743	0.94[ASN][1000 genomes]
rs72842060	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72842061	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7558479	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7572209	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7587003	0.94[ASN][1000 genomes]

No data

Chromatin state (count:91 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:86066000-86106200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr2:86066400-86091400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr2:86067000-86099000	Weak transcription	Gastric	stomach
4	chr2:86071800-86096200	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr2:86072000-86090400	Strong transcription	Cortex derived primary cultured neurospheres	brain
6	chr2:86072000-86096800	Weak transcription	Psoas Muscle	Psoas
7	chr2:86074000-86089800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr2:86074600-86089600	Weak transcription	NH-A	brain
9	chr2:86075400-86114000	Weak transcription	Aorta	Aorta
10	chr2:86076000-86090400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr2:86077200-86088600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr2:86079000-86092000	Weak transcription	Esophagus	oesophagus
13	chr2:86079200-86090400	Strong transcription	A549	lung
14	chr2:86079200-86092000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr2:86079200-86092600	Weak transcription	Colon Smooth Muscle	Colon
16	chr2:86079200-86092800	Weak transcription	Stomach Smooth Muscle	stomach
17	chr2:86079600-86087800	Weak transcription	Osteobl	bone
18	chr2:86079600-86106200	Weak transcription	Brain Germinal Matrix	brain
19	chr2:86080000-86091600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr2:86080200-86088600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr2:86080400-86093000	Weak transcription	HSMMtube	muscle
22	chr2:86080800-86093600	Weak transcription	K562	blood
23	chr2:86081000-86088000	Weak transcription	Fetal Intestine Large	intestine
24	chr2:86081000-86112400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr2:86081600-86088200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr2:86081600-86088200	Strong transcription	Fetal Muscle Leg	muscle
27	chr2:86081600-86092600	Weak transcription	Rectal Smooth Muscle	rectum
28	chr2:86081600-86092800	Weak transcription	Duodenum Smooth Muscle	Duodenum
29	chr2:86081600-86093000	Weak transcription	Colonic Mucosa	Colon
30	chr2:86081600-86095000	Weak transcription	Pancreas	Pancrea
31	chr2:86081600-86099200	Weak transcription	Left Ventricle	heart
32	chr2:86081600-86100600	Weak transcription	NHDF-Ad	bronchial
33	chr2:86081800-86092000	Weak transcription	Fetal Intestine Small	intestine
34	chr2:86081800-86092000	Weak transcription	Small Intestine	intestine
35	chr2:86081800-86093000	Weak transcription	Duodenum Mucosa	Duodenum
36	chr2:86081800-86093000	Weak transcription	Rectal Mucosa Donor 31	rectum
37	chr2:86081800-86093000	Weak transcription	Stomach Mucosa	stomach
38	chr2:86082000-86088600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
39	chr2:86082000-86094000	Strong transcription	Monocytes-CD14+_RO01746	blood
40	chr2:86082000-86099000	Weak transcription	Right Ventricle	heart
41	chr2:86082400-86087800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
42	chr2:86082400-86088200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
43	chr2:86082600-86087400	Strong transcription	Brain Inferior Temporal Lobe	brain
44	chr2:86082600-86088000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
45	chr2:86082600-86088200	Strong transcription	Brain Hippocampus Middle	brain
46	chr2:86083000-86087200	Strong transcription	Primary B cells from peripheral blood	blood
47	chr2:86083000-86088200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
48	chr2:86083000-86092000	Strong transcription	Fetal Thymus	thymus
49	chr2:86083200-86088000	Weak transcription	Primary T helper cells PMA-I stimulated	--
50	chr2:86083200-86088200	Strong transcription	Primary T helper naive cells fromperipheralblood	blood

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