Variant report

Variant	rs7558479
Chromosome Location	chr2:86090221-86090222
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:86087814..86090796-chr2:86100697..86102670,2	K562	blood:
2	chr2:86088793..86090572-chr2:86178202..86180924,2	MCF-7	breast:
3	chr2:86084824..86090316-chr2:86093337..86098199,7	K562	blood:
4	chr2:86071813..86074285-chr2:86090183..86092238,2	K562	blood:

Variant related genes	Relation type
ENSG00000115525	Chromatin interaction

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10496320	0.87[CEU][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10865480	0.90[ASN][1000 genomes]
rs11127003	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11127004	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11127006	1.00[CEU][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11127007	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11127008	0.95[ASN][1000 genomes]
rs11127009	0.95[ASN][1000 genomes]
rs11694145	0.80[AMR][1000 genomes]
rs12614498	0.93[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12618873	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12622987	0.87[CEU][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12990400	0.92[AMR][1000 genomes]
rs13014421	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13014890	0.81[CEU][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13016226	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13033743	0.86[AMR][1000 genomes]
rs17026675	0.87[CEU][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1878905	0.95[ASN][1000 genomes]
rs2280312	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3770097	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3810821	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4832016	0.95[ASN][1000 genomes]
rs4832210	0.94[ASN][1000 genomes]
rs56049132	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56083339	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62147537	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62147538	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62147540	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6547636	0.96[ASN][1000 genomes]
rs6547640	0.95[ASN][1000 genomes]
rs6720161	0.95[ASN][1000 genomes]
rs6750686	0.96[ASN][1000 genomes]
rs6751743	0.95[ASN][1000 genomes]
rs72842060	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72842061	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7572209	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7587003	0.95[ASN][1000 genomes]

No data

Chromatin state (count:93 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:86066000-86106200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr2:86066400-86091400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr2:86067000-86099000	Weak transcription	Gastric	stomach
4	chr2:86071800-86096200	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr2:86072000-86090400	Strong transcription	Cortex derived primary cultured neurospheres	brain
6	chr2:86072000-86096800	Weak transcription	Psoas Muscle	Psoas
7	chr2:86075400-86114000	Weak transcription	Aorta	Aorta
8	chr2:86076000-86090400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr2:86079000-86092000	Weak transcription	Esophagus	oesophagus
10	chr2:86079200-86090400	Strong transcription	A549	lung
11	chr2:86079200-86092000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr2:86079200-86092600	Weak transcription	Colon Smooth Muscle	Colon
13	chr2:86079200-86092800	Weak transcription	Stomach Smooth Muscle	stomach
14	chr2:86079600-86106200	Weak transcription	Brain Germinal Matrix	brain
15	chr2:86080000-86091600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr2:86080400-86093000	Weak transcription	HSMMtube	muscle
17	chr2:86080800-86093600	Weak transcription	K562	blood
18	chr2:86081000-86112400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr2:86081600-86092600	Weak transcription	Rectal Smooth Muscle	rectum
20	chr2:86081600-86092800	Weak transcription	Duodenum Smooth Muscle	Duodenum
21	chr2:86081600-86093000	Weak transcription	Colonic Mucosa	Colon
22	chr2:86081600-86095000	Weak transcription	Pancreas	Pancrea
23	chr2:86081600-86099200	Weak transcription	Left Ventricle	heart
24	chr2:86081600-86100600	Weak transcription	NHDF-Ad	bronchial
25	chr2:86081800-86092000	Weak transcription	Fetal Intestine Small	intestine
26	chr2:86081800-86092000	Weak transcription	Small Intestine	intestine
27	chr2:86081800-86093000	Weak transcription	Duodenum Mucosa	Duodenum
28	chr2:86081800-86093000	Weak transcription	Rectal Mucosa Donor 31	rectum
29	chr2:86081800-86093000	Weak transcription	Stomach Mucosa	stomach
30	chr2:86082000-86094000	Strong transcription	Monocytes-CD14+_RO01746	blood
31	chr2:86082000-86099000	Weak transcription	Right Ventricle	heart
32	chr2:86083000-86092000	Strong transcription	Fetal Thymus	thymus
33	chr2:86083200-86090600	Strong transcription	Fetal Muscle Trunk	muscle
34	chr2:86083200-86090800	Strong transcription	Primary monocytes fromperipheralblood	blood
35	chr2:86083200-86090800	Strong transcription	Dnd41	blood
36	chr2:86083600-86090800	Strong transcription	Thymus	Thymus
37	chr2:86084200-86090600	Strong transcription	Skeletal Muscle Male	skeletal muscle
38	chr2:86085000-86090400	Strong transcription	Liver	Liver
39	chr2:86086000-86090600	Genic enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
40	chr2:86086800-86092000	Weak transcription	Placenta	Placenta
41	chr2:86086800-86113000	Weak transcription	Rectal Mucosa Donor 29	rectum
42	chr2:86087200-86091200	Genic enhancers	Primary B cells from peripheral blood	blood
43	chr2:86087400-86093000	Weak transcription	Skeletal Muscle Female	skeletal muscle
44	chr2:86087400-86096800	Weak transcription	NHEK	skin
45	chr2:86087400-86101800	Weak transcription	Fetal Brain Female	brain
46	chr2:86088000-86090400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
47	chr2:86088000-86090800	Enhancers	Primary T killer memory cells from peripheral blood	blood
48	chr2:86088200-86090400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
49	chr2:86088200-86099000	Weak transcription	Adipose Nuclei	Adipose
50	chr2:86088400-86091600	Weak transcription	Fetal Intestine Large	intestine

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