Variant report

Variant	rs62147538
Chromosome Location	chr2:86094686-86094687
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAFF	chr2:86093663-86095401	K562	blood:	n/a	chr2:86094440-86094458
2	MAFK	chr2:86093961-86094968	H1-hESC	embryonic stem cell:	n/a	chr2:86094441-86094456
3	MAFK	chr2:86094182-86094908	K562	blood:	n/a	chr2:86094441-86094456
4	MAFK	chr2:86093431-86095182	GM12878	blood:	n/a	chr2:86094441-86094456
5	MAFK	chr2:86094230-86094776	IMR90	lung:	n/a	chr2:86094441-86094456

Variant related genes	Relation type
ST3GAL5	TF binding region

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10496320	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10865480	0.90[ASN][1000 genomes]
rs11127003	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11127004	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11127006	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11127007	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11127008	0.95[ASN][1000 genomes]
rs11127009	0.95[ASN][1000 genomes]
rs11694145	0.80[AMR][1000 genomes]
rs12614498	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12618873	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12622987	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12990400	0.92[AMR][1000 genomes]
rs13014421	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13014890	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13016226	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13033743	0.86[AMR][1000 genomes]
rs17026675	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1878905	0.95[ASN][1000 genomes]
rs2280312	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3770097	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3810821	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4832016	0.95[ASN][1000 genomes]
rs4832210	0.94[ASN][1000 genomes]
rs56049132	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56083339	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62147537	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62147540	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6547636	0.96[ASN][1000 genomes]
rs6547640	0.95[ASN][1000 genomes]
rs6720161	0.95[ASN][1000 genomes]
rs6750686	0.96[ASN][1000 genomes]
rs6751743	0.95[ASN][1000 genomes]
rs72842060	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72842061	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7558479	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7572209	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7587003	0.95[ASN][1000 genomes]

No data

Chromatin state (count:87 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:86066000-86106200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr2:86067000-86099000	Weak transcription	Gastric	stomach
3	chr2:86071800-86096200	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr2:86072000-86096800	Weak transcription	Psoas Muscle	Psoas
5	chr2:86075400-86114000	Weak transcription	Aorta	Aorta
6	chr2:86079600-86106200	Weak transcription	Brain Germinal Matrix	brain
7	chr2:86081000-86112400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr2:86081600-86095000	Weak transcription	Pancreas	Pancrea
9	chr2:86081600-86099200	Weak transcription	Left Ventricle	heart
10	chr2:86081600-86100600	Weak transcription	NHDF-Ad	bronchial
11	chr2:86082000-86099000	Weak transcription	Right Ventricle	heart
12	chr2:86086800-86113000	Weak transcription	Rectal Mucosa Donor 29	rectum
13	chr2:86087400-86096800	Weak transcription	NHEK	skin
14	chr2:86087400-86101800	Weak transcription	Fetal Brain Female	brain
15	chr2:86088200-86099000	Weak transcription	Adipose Nuclei	Adipose
16	chr2:86088400-86105400	Weak transcription	Osteobl	bone
17	chr2:86088600-86111600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr2:86089000-86102600	Weak transcription	Primary hematopoietic stem cells	blood
19	chr2:86089400-86094800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
20	chr2:86089800-86100000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
21	chr2:86089800-86106000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr2:86089800-86106000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
23	chr2:86090400-86096000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr2:86090400-86097400	Weak transcription	Cortex derived primary cultured neurospheres	brain
25	chr2:86090400-86099800	Weak transcription	Spleen	Spleen
26	chr2:86090400-86102600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr2:86090400-86104600	Weak transcription	Liver	Liver
28	chr2:86090600-86096200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr2:86090600-86096200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
30	chr2:86090600-86096800	Weak transcription	Fetal Muscle Leg	muscle
31	chr2:86090600-86097200	Weak transcription	Skeletal Muscle Male	skeletal muscle
32	chr2:86090600-86109000	Weak transcription	Fetal Stomach	stomach
33	chr2:86090600-86110600	Weak transcription	Fetal Muscle Trunk	muscle
34	chr2:86090800-86094800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr2:86090800-86095000	Weak transcription	Thymus	Thymus
36	chr2:86090800-86096000	Weak transcription	Primary monocytes fromperipheralblood	blood
37	chr2:86091000-86095200	Enhancers	Primary T helper cells PMA-I stimulated	--
38	chr2:86091400-86101400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
39	chr2:86092000-86095000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
40	chr2:86092000-86095000	Genic enhancers	Fetal Thymus	thymus
41	chr2:86092000-86095200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
42	chr2:86092200-86096800	Weak transcription	Lung	lung
43	chr2:86092200-86105200	Weak transcription	Right Atrium	heart
44	chr2:86092600-86094800	Enhancers	Primary T cells fromperipheralblood	blood
45	chr2:86092600-86094800	Enhancers	Primary T helper naive cells from peripheral blood	blood
46	chr2:86092800-86094800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
47	chr2:86092800-86094800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
48	chr2:86092800-86095200	Genic enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
49	chr2:86093000-86094800	Enhancers	Brain Cingulate Gyrus	brain
50	chr2:86093200-86095400	Enhancers	Brain Angular Gyrus	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links