Variant report

Variant	rs12618873
Chromosome Location	chr2:86091439-86091440
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:86071813..86074285-chr2:86090183..86092238,2	K562	blood:
2	chr2:86090368..86092205-chr2:86093898..86095605,2	K562	blood:

Variant related genes	Relation type
ENSG00000115525	Chromatin interaction

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10496320	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10865480	0.90[ASN][1000 genomes]
rs11127003	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11127004	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11127006	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11127007	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11127008	0.95[ASN][1000 genomes]
rs11127009	0.95[ASN][1000 genomes]
rs11694145	0.86[AMR][1000 genomes]
rs12614498	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12622987	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12990400	0.85[AMR][1000 genomes]
rs13014421	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13014890	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13016226	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13033743	0.92[AMR][1000 genomes]
rs17026675	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1878905	0.95[ASN][1000 genomes]
rs2280312	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3770097	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3810821	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4832016	0.95[ASN][1000 genomes]
rs4832210	0.94[ASN][1000 genomes]
rs56049132	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56083339	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62147537	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62147538	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62147540	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6547636	0.96[ASN][1000 genomes]
rs6547640	0.95[ASN][1000 genomes]
rs6720161	0.95[ASN][1000 genomes]
rs6750686	0.96[ASN][1000 genomes]
rs6751743	0.95[ASN][1000 genomes]
rs72842060	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72842061	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7558479	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7572209	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7587003	0.95[ASN][1000 genomes]

No data

Chromatin state (count:93 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:86066000-86106200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr2:86067000-86099000	Weak transcription	Gastric	stomach
3	chr2:86071800-86096200	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr2:86072000-86096800	Weak transcription	Psoas Muscle	Psoas
5	chr2:86075400-86114000	Weak transcription	Aorta	Aorta
6	chr2:86079000-86092000	Weak transcription	Esophagus	oesophagus
7	chr2:86079200-86092000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr2:86079200-86092600	Weak transcription	Colon Smooth Muscle	Colon
9	chr2:86079200-86092800	Weak transcription	Stomach Smooth Muscle	stomach
10	chr2:86079600-86106200	Weak transcription	Brain Germinal Matrix	brain
11	chr2:86080000-86091600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr2:86080400-86093000	Weak transcription	HSMMtube	muscle
13	chr2:86080800-86093600	Weak transcription	K562	blood
14	chr2:86081000-86112400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr2:86081600-86092600	Weak transcription	Rectal Smooth Muscle	rectum
16	chr2:86081600-86092800	Weak transcription	Duodenum Smooth Muscle	Duodenum
17	chr2:86081600-86093000	Weak transcription	Colonic Mucosa	Colon
18	chr2:86081600-86095000	Weak transcription	Pancreas	Pancrea
19	chr2:86081600-86099200	Weak transcription	Left Ventricle	heart
20	chr2:86081600-86100600	Weak transcription	NHDF-Ad	bronchial
21	chr2:86081800-86092000	Weak transcription	Fetal Intestine Small	intestine
22	chr2:86081800-86092000	Weak transcription	Small Intestine	intestine
23	chr2:86081800-86093000	Weak transcription	Duodenum Mucosa	Duodenum
24	chr2:86081800-86093000	Weak transcription	Rectal Mucosa Donor 31	rectum
25	chr2:86081800-86093000	Weak transcription	Stomach Mucosa	stomach
26	chr2:86082000-86094000	Strong transcription	Monocytes-CD14+_RO01746	blood
27	chr2:86082000-86099000	Weak transcription	Right Ventricle	heart
28	chr2:86083000-86092000	Strong transcription	Fetal Thymus	thymus
29	chr2:86086800-86092000	Weak transcription	Placenta	Placenta
30	chr2:86086800-86113000	Weak transcription	Rectal Mucosa Donor 29	rectum
31	chr2:86087400-86093000	Weak transcription	Skeletal Muscle Female	skeletal muscle
32	chr2:86087400-86096800	Weak transcription	NHEK	skin
33	chr2:86087400-86101800	Weak transcription	Fetal Brain Female	brain
34	chr2:86088200-86099000	Weak transcription	Adipose Nuclei	Adipose
35	chr2:86088400-86091600	Weak transcription	Fetal Intestine Large	intestine
36	chr2:86088400-86105400	Weak transcription	Osteobl	bone
37	chr2:86088600-86092000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
38	chr2:86088600-86111600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr2:86089000-86092600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
40	chr2:86089000-86102600	Weak transcription	Primary hematopoietic stem cells	blood
41	chr2:86089400-86092000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
42	chr2:86089400-86094800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
43	chr2:86089800-86092600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
44	chr2:86089800-86092600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
45	chr2:86089800-86100000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
46	chr2:86089800-86106000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
47	chr2:86089800-86106000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
48	chr2:86090200-86092400	Weak transcription	NH-A	brain
49	chr2:86090400-86091800	Weak transcription	GM12878-XiMat	blood
50	chr2:86090400-86092000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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