Variant report

Variant	rs6720161
Chromosome Location	chr2:86111250-86111251
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:86110110..86112951-chr2:86114796..86117966,4	MCF-7	breast:
2	chr2:86110287..86113601-chr2:86124119..86126879,3	K562	blood:
3	chr2:86101410..86103252-chr2:86110793..86113743,3	K562	blood:
4	chr2:86110403..86112646-chr2:86114829..86116563,3	K562	blood:
5	chr2:86110275..86112435-chr2:86115823..86118028,2	K562	blood:

Variant related genes	Relation type
ENSG00000115525	Chromatin interaction
ENSG00000232504	Chromatin interaction

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10204648	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10496320	0.83[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs10865480	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11127002	0.81[EUR][1000 genomes]
rs11127003	0.95[ASN][1000 genomes]
rs11127004	0.95[ASN][1000 genomes]
rs11127006	0.89[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs11127007	0.96[ASN][1000 genomes]
rs11127008	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11127009	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12478916	0.96[YRI][hapmap];0.88[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs12614498	0.88[CHB][hapmap];0.95[ASN][1000 genomes]
rs12618873	0.95[ASN][1000 genomes]
rs12622987	0.89[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs13014421	0.83[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs13014890	0.83[ASN][1000 genomes]
rs13016226	0.96[ASN][1000 genomes]
rs1543972	0.89[CEU][hapmap];0.88[CHB][hapmap];0.84[JPT][hapmap]
rs17026675	0.83[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs17026750	0.82[CEU][hapmap]
rs1878898	0.89[CEU][hapmap];0.88[CHB][hapmap];0.93[GIH][hapmap];0.84[JPT][hapmap]
rs1878904	0.89[CEU][hapmap];0.88[CHB][hapmap];0.93[GIH][hapmap];0.84[JPT][hapmap]
rs1878905	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2280312	0.86[ASN][1000 genomes]
rs2577768	0.88[CEU][hapmap];0.88[CHB][hapmap];0.84[JPT][hapmap]
rs2577769	0.89[CEU][hapmap];0.88[CHB][hapmap];0.84[JPT][hapmap]
rs2679710	0.89[CEU][hapmap];0.88[CHB][hapmap];0.84[JPT][hapmap]
rs2679711	0.89[CEU][hapmap];0.88[CHB][hapmap];0.84[JPT][hapmap]
rs2679712	0.89[CEU][hapmap];0.88[CHB][hapmap];0.93[GIH][hapmap];0.84[JPT][hapmap]
rs2679713	0.89[CEU][hapmap];0.88[CHB][hapmap];0.84[JPT][hapmap]
rs2679722	0.85[CEU][hapmap];0.83[GIH][hapmap]
rs3770097	0.85[ASN][1000 genomes]
rs3810821	0.89[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs4832016	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4832210	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4832217	0.89[CEU][hapmap];0.88[CHB][hapmap];0.93[GIH][hapmap];0.84[JPT][hapmap]
rs56049132	0.95[ASN][1000 genomes]
rs56083339	0.95[ASN][1000 genomes]
rs62147537	0.94[ASN][1000 genomes]
rs62147538	0.95[ASN][1000 genomes]
rs62147540	0.95[ASN][1000 genomes]
rs6547636	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];0.96[MKK][hapmap];0.98[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6547638	0.81[ASW][hapmap]
rs6547640	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6735629	0.89[CEU][hapmap];0.88[CHB][hapmap];0.84[JPT][hapmap]
rs6750686	1.00[CEU][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6751743	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7558479	0.95[ASN][1000 genomes]
rs7572209	0.89[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs7587003	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs764471	0.89[CEU][hapmap];0.88[CHB][hapmap];0.84[JPT][hapmap]
rs954176	0.89[CEU][hapmap];0.88[CHB][hapmap];0.84[JPT][hapmap]
rs959313	0.89[CEU][hapmap];0.88[CHB][hapmap];0.84[JPT][hapmap]

No data

Chromatin state (count:84 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:86075400-86114000	Weak transcription	Aorta	Aorta
2	chr2:86081000-86112400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr2:86086800-86113000	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr2:86088600-86111600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr2:86093400-86112400	Weak transcription	Colonic Mucosa	Colon
6	chr2:86093600-86111600	Weak transcription	Colon Smooth Muscle	Colon
7	chr2:86093800-86113000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr2:86100200-86111800	Weak transcription	K562	blood
9	chr2:86101200-86111600	Weak transcription	NHDF-Ad	bronchial
10	chr2:86102800-86115200	Weak transcription	Small Intestine	intestine
11	chr2:86103600-86111800	Weak transcription	Fetal Muscle Leg	muscle
12	chr2:86104200-86112400	Weak transcription	Monocytes-CD14+_RO01746	blood
13	chr2:86104600-86112000	Weak transcription	Stomach Mucosa	stomach
14	chr2:86104800-86113400	Weak transcription	Pancreatic Islets	Pancreatic Islet
15	chr2:86105400-86112400	Weak transcription	Ovary	ovary
16	chr2:86106200-86112200	Weak transcription	Muscle Satellite Cultured Cells	--
17	chr2:86106200-86112200	Weak transcription	Liver	Liver
18	chr2:86106400-86112200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr2:86106400-86112400	Weak transcription	Rectal Mucosa Donor 31	rectum
20	chr2:86106400-86112400	Weak transcription	NH-A	brain
21	chr2:86106400-86113800	Weak transcription	Pancreas	Pancrea
22	chr2:86106400-86113800	Weak transcription	Right Atrium	heart
23	chr2:86106400-86115200	Weak transcription	Gastric	stomach
24	chr2:86106600-86111600	Weak transcription	Skeletal Muscle Female	skeletal muscle
25	chr2:86106600-86111800	Weak transcription	Duodenum Mucosa	Duodenum
26	chr2:86106600-86113200	Weak transcription	Sigmoid Colon	Sigmoid Colon
27	chr2:86106800-86112400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
28	chr2:86106800-86112400	Weak transcription	Spleen	Spleen
29	chr2:86107000-86111800	Weak transcription	Osteobl	bone
30	chr2:86107000-86113400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
31	chr2:86107200-86111400	Weak transcription	Primary T cells from cord blood	blood
32	chr2:86107200-86112400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
33	chr2:86107400-86111600	Weak transcription	Primary T helper cells PMA-I stimulated	--
34	chr2:86107400-86111800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr2:86107400-86112000	Weak transcription	Primary hematopoietic stem cells	blood
36	chr2:86107400-86112000	Weak transcription	Brain Cingulate Gyrus	brain
37	chr2:86107400-86112400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
38	chr2:86107400-86113000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
39	chr2:86107600-86111400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
40	chr2:86107600-86111600	Weak transcription	Brain Angular Gyrus	brain
41	chr2:86107600-86111800	Weak transcription	Primary T helper cells fromperipheralblood	blood
42	chr2:86107600-86112400	Weak transcription	Duodenum Smooth Muscle	Duodenum
43	chr2:86107800-86113600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
44	chr2:86108000-86111400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
45	chr2:86108200-86111800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
46	chr2:86108200-86112400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
47	chr2:86108800-86112200	Weak transcription	Primary T cells fromperipheralblood	blood
48	chr2:86109600-86111400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
49	chr2:86109600-86111800	Weak transcription	Placenta	Placenta
50	chr2:86109600-86113200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood

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