Variant report

Variant	rs959313
Chromosome Location	chr2:86129332-86129333
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:86127578..86130184-chr2:86130997..86134221,3	K562	blood:
2	chr2:86115517..86117569-chr2:86127124..86130005,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ATOH8-2	chr2:86128682-86129634	XLOC_001558

Variant related genes	Relation type
ENSG00000232504	Chromatin interaction
ENSG00000272564	Chromatin interaction
ENSG00000115525	Chromatin interaction

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs10496320	0.84[JPT][hapmap]
rs11127006	0.85[JPT][hapmap]
rs1135603	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12622987	0.84[JPT][hapmap]
rs13008291	0.96[ASN][1000 genomes]
rs13014421	0.85[JPT][hapmap]
rs1401384	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1518983	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1518991	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1543972	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17026675	0.84[JPT][hapmap]
rs17026750	0.91[CEU][hapmap]
rs1878898	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1878899	0.98[AFR][1000 genomes];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1878904	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2577768	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2577769	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2577770	0.96[AFR][1000 genomes];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2577771	0.98[AFR][1000 genomes];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2577772	0.99[AFR][1000 genomes];0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2577774	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2577775	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2577777	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2577778	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2577779	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2577780	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2577786	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2679710	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2679711	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2679712	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2679713	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2679714	0.97[AFR][1000 genomes];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2679715	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2679716	0.84[AFR][1000 genomes];0.80[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2679717	0.98[AFR][1000 genomes];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2679718	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2679719	0.99[AFR][1000 genomes];0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2679720	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2679721	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2679722	0.96[CEU][hapmap]
rs2679725	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs28364794	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2918014	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2918015	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2918016	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2945823	0.88[EUR][1000 genomes]
rs2945825	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2945826	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35153287	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3810821	0.84[JPT][hapmap]
rs4832016	0.86[CEU][hapmap];0.83[CHB][hapmap];0.85[JPT][hapmap]
rs4832210	0.86[CEU][hapmap];0.83[CHB][hapmap];0.85[JPT][hapmap]
rs4832216	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4832217	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4832218	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62150576	0.95[ASN][1000 genomes]
rs6547636	0.89[CEU][hapmap];0.88[CHB][hapmap];0.84[JPT][hapmap]
rs6720161	0.89[CEU][hapmap];0.88[CHB][hapmap];0.84[JPT][hapmap]
rs6734115	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6735629	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6747179	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6747294	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6750686	0.84[CEU][hapmap]
rs7572209	0.85[JPT][hapmap]
rs7593080	0.81[EUR][1000 genomes]
rs764471	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs954176	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:86118600-86131000	Weak transcription	Thymus	Thymus
2	chr2:86119800-86132200	Weak transcription	Duodenum Smooth Muscle	Duodenum
3	chr2:86120200-86134200	Weak transcription	Monocytes-CD14+_RO01746	blood
4	chr2:86120800-86131400	Weak transcription	Pancreas	Pancrea
5	chr2:86121400-86132000	Weak transcription	Placenta	Placenta
6	chr2:86121600-86129400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr2:86121600-86131800	Weak transcription	Adipose Nuclei	Adipose
8	chr2:86122000-86134400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr2:86123200-86132400	Weak transcription	A549	lung
10	chr2:86123200-86132600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr2:86124400-86134000	Weak transcription	Lung	lung
12	chr2:86126800-86129400	Enhancers	Brain Angular Gyrus	brain
13	chr2:86127200-86132000	Weak transcription	Skeletal Muscle Female	skeletal muscle
14	chr2:86127400-86132000	Weak transcription	Skeletal Muscle Male	skeletal muscle
15	chr2:86127600-86130800	Weak transcription	K562	blood
16	chr2:86128000-86130000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
17	chr2:86128000-86132200	Weak transcription	Spleen	Spleen
18	chr2:86128400-86131400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
19	chr2:86128600-86129600	Flanking Active TSS	Brain Cingulate Gyrus	brain
20	chr2:86128600-86141200	Weak transcription	Primary T cells from cord blood	blood
21	chr2:86128800-86129800	Flanking Active TSS	Brain Anterior Caudate	brain
22	chr2:86128800-86129800	Flanking Active TSS	Brain Hippocampus Middle	brain
23	chr2:86128800-86129800	Enhancers	Fetal Thymus	thymus
24	chr2:86128800-86130200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr2:86128800-86130600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr2:86128800-86131200	Weak transcription	Primary B cells from peripheral blood	blood
27	chr2:86128800-86133200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr2:86128800-86133800	Enhancers	Cortex derived primary cultured neurospheres	brain
29	chr2:86129000-86129400	Enhancers	Fetal Muscle Leg	muscle
30	chr2:86129000-86129600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
31	chr2:86129000-86129600	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
32	chr2:86129000-86129800	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
33	chr2:86129000-86129800	Flanking Active TSS	Brain Substantia Nigra	brain
34	chr2:86129200-86129400	Enhancers	Breast Myoepithelial Primary Cells	Breast
35	chr2:86129200-86129600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
36	chr2:86129200-86129800	Enhancers	NHDF-Ad	bronchial

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