Variant report

Variant	rs2679713
Chromosome Location	chr2:86128855-86128856
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:6)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:6 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr2:86128806..86129326-chr2:86252133..86252907,2	MCF-7	breast:
2	chr2:86113728..86117711-chr2:86127161..86129318,3	K562	blood:
3	chr2:86127578..86130184-chr2:86130997..86134221,3	K562	blood:
4	chr2:86127269..86128951-chr2:86134327..86136016,2	K562	blood:
5	chr2:86115517..86117569-chr2:86127124..86130005,2	MCF-7	breast:
6	chr2:86123033..86125341-chr2:86126269..86129259,2	K562	blood:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ATOH8-2	chr2:86128682-86129634	XLOC_001558

No data

Variant related genes	Relation type
ENSG00000272564	Chromatin interaction
ENSG00000115525	Chromatin interaction
ENSG00000232504	Chromatin interaction

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs10496320	0.84[JPT][hapmap]
rs11127006	0.86[JPT][hapmap]
rs1135603	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12622987	0.84[JPT][hapmap]
rs13008291	0.96[ASN][1000 genomes]
rs13014421	0.86[JPT][hapmap]
rs1401384	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1518983	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1518991	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1543972	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17026675	0.84[JPT][hapmap]
rs17026750	0.91[CEU][hapmap]
rs1878898	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1878899	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1878904	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2577768	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2577769	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2577770	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2577771	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2577772	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2577774	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2577775	0.95[AFR][1000 genomes];0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2577777	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2577778	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2577779	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2577780	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2577786	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2679710	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2679711	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2679712	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2679714	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2679715	0.91[AFR][1000 genomes];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2679716	0.80[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2679717	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2679718	0.81[AFR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2679719	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2679720	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2679721	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2679722	0.96[CEU][hapmap]
rs2679725	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs28364794	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2918014	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2918015	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2918016	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2945823	0.88[EUR][1000 genomes]
rs2945825	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2945826	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35153287	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3810821	0.84[JPT][hapmap]
rs4832016	0.86[CEU][hapmap];0.83[CHB][hapmap];0.86[JPT][hapmap]
rs4832210	0.86[CEU][hapmap];0.83[CHB][hapmap];0.85[JPT][hapmap]
rs4832216	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4832217	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4832218	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62150576	0.95[ASN][1000 genomes]
rs6547636	0.89[CEU][hapmap];0.88[CHB][hapmap];0.84[JPT][hapmap]
rs6720161	0.89[CEU][hapmap];0.88[CHB][hapmap];0.84[JPT][hapmap]
rs6734115	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6735629	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6747179	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6747294	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6750686	0.84[CEU][hapmap]
rs7572209	0.86[JPT][hapmap]
rs7593080	0.81[EUR][1000 genomes]
rs764471	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs954176	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs959313	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:86118600-86131000	Weak transcription	Thymus	Thymus
2	chr2:86119800-86132200	Weak transcription	Duodenum Smooth Muscle	Duodenum
3	chr2:86120200-86134200	Weak transcription	Monocytes-CD14+_RO01746	blood
4	chr2:86120800-86131400	Weak transcription	Pancreas	Pancrea
5	chr2:86121400-86132000	Weak transcription	Placenta	Placenta
6	chr2:86121600-86129000	Weak transcription	Fetal Muscle Leg	muscle
7	chr2:86121600-86129400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr2:86121600-86131800	Weak transcription	Adipose Nuclei	Adipose
9	chr2:86122000-86134400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr2:86123200-86132400	Weak transcription	A549	lung
11	chr2:86123200-86132600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr2:86124400-86129000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr2:86124400-86134000	Weak transcription	Lung	lung
14	chr2:86126000-86129000	Enhancers	Brain Substantia Nigra	brain
15	chr2:86126400-86129000	Enhancers	Brain Inferior Temporal Lobe	brain
16	chr2:86126800-86129400	Enhancers	Brain Angular Gyrus	brain
17	chr2:86127200-86132000	Weak transcription	Skeletal Muscle Female	skeletal muscle
18	chr2:86127400-86132000	Weak transcription	Skeletal Muscle Male	skeletal muscle
19	chr2:86127600-86130800	Weak transcription	K562	blood
20	chr2:86128000-86130000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
21	chr2:86128000-86132200	Weak transcription	Spleen	Spleen
22	chr2:86128400-86131400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
23	chr2:86128600-86129600	Flanking Active TSS	Brain Cingulate Gyrus	brain
24	chr2:86128600-86141200	Weak transcription	Primary T cells from cord blood	blood
25	chr2:86128800-86129000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
26	chr2:86128800-86129200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
27	chr2:86128800-86129800	Flanking Active TSS	Brain Anterior Caudate	brain
28	chr2:86128800-86129800	Flanking Active TSS	Brain Hippocampus Middle	brain
29	chr2:86128800-86129800	Enhancers	Fetal Thymus	thymus
30	chr2:86128800-86130200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr2:86128800-86130600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
32	chr2:86128800-86131200	Weak transcription	Primary B cells from peripheral blood	blood
33	chr2:86128800-86133200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
34	chr2:86128800-86133800	Enhancers	Cortex derived primary cultured neurospheres	brain

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