Variant report

Variant	rs4832016
Chromosome Location	chr2:86103273-86103274
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:86101610..86104056-chr2:86104461..86106996,3	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-POLR1A-6	chr2:86100851-86104502	l_1878_NR_026984

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10204648	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10496320	0.83[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs10865480	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11127003	0.95[ASN][1000 genomes]
rs11127004	0.95[ASN][1000 genomes]
rs11127006	0.89[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs11127007	0.96[ASN][1000 genomes]
rs11127008	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11127009	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12478916	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs12614498	0.88[CHB][hapmap];0.95[ASN][1000 genomes]
rs12618873	0.95[ASN][1000 genomes]
rs12622987	0.89[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs13014421	0.83[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs13014890	0.83[ASN][1000 genomes]
rs13016226	0.96[ASN][1000 genomes]
rs1543972	0.86[CEU][hapmap];0.83[CHB][hapmap];0.86[JPT][hapmap]
rs17026675	0.83[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs1878898	0.89[CEU][hapmap];0.88[CHB][hapmap];0.84[JPT][hapmap]
rs1878904	0.89[CEU][hapmap];0.88[CHB][hapmap];0.84[JPT][hapmap]
rs1878905	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2280312	0.86[ASN][1000 genomes]
rs2577768	0.86[CEU][hapmap];0.83[CHB][hapmap];0.86[JPT][hapmap]
rs2577769	0.86[CEU][hapmap];0.83[CHB][hapmap];0.86[JPT][hapmap]
rs2679710	0.86[CEU][hapmap];0.83[CHB][hapmap];0.86[JPT][hapmap]
rs2679711	0.86[CEU][hapmap];0.83[CHB][hapmap];0.86[JPT][hapmap]
rs2679712	0.89[CEU][hapmap];0.88[CHB][hapmap];0.84[JPT][hapmap]
rs2679713	0.86[CEU][hapmap];0.83[CHB][hapmap];0.86[JPT][hapmap]
rs2679722	0.85[CEU][hapmap]
rs3770097	0.85[ASN][1000 genomes]
rs3810821	0.89[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs4832210	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4832217	0.89[CEU][hapmap];0.88[CHB][hapmap];0.84[JPT][hapmap]
rs56049132	0.95[ASN][1000 genomes]
rs56083339	0.95[ASN][1000 genomes]
rs62147537	0.94[ASN][1000 genomes]
rs62147538	0.95[ASN][1000 genomes]
rs62147540	0.95[ASN][1000 genomes]
rs6547636	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6547640	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6720161	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6735629	0.86[CEU][hapmap];0.83[CHB][hapmap];0.86[JPT][hapmap]
rs6750686	1.00[CEU][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6751743	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7558479	0.95[ASN][1000 genomes]
rs7572209	0.89[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs7587003	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs764471	0.86[CEU][hapmap];0.83[CHB][hapmap];0.86[JPT][hapmap]
rs954176	0.86[CEU][hapmap];0.83[CHB][hapmap];0.86[JPT][hapmap]
rs959313	0.86[CEU][hapmap];0.83[CHB][hapmap];0.85[JPT][hapmap]

No data

Chromatin state (count:88 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:86066000-86106200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr2:86075400-86114000	Weak transcription	Aorta	Aorta
3	chr2:86079600-86106200	Weak transcription	Brain Germinal Matrix	brain
4	chr2:86081000-86112400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr2:86086800-86113000	Weak transcription	Rectal Mucosa Donor 29	rectum
6	chr2:86088400-86105400	Weak transcription	Osteobl	bone
7	chr2:86088600-86111600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr2:86089800-86106000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr2:86089800-86106000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
10	chr2:86090400-86104600	Weak transcription	Liver	Liver
11	chr2:86090600-86109000	Weak transcription	Fetal Stomach	stomach
12	chr2:86090600-86110600	Weak transcription	Fetal Muscle Trunk	muscle
13	chr2:86092200-86105200	Weak transcription	Right Atrium	heart
14	chr2:86093200-86106200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
15	chr2:86093400-86104600	Weak transcription	Ovary	ovary
16	chr2:86093400-86105800	Weak transcription	Rectal Mucosa Donor 31	rectum
17	chr2:86093400-86106200	Weak transcription	Duodenum Mucosa	Duodenum
18	chr2:86093400-86106800	Weak transcription	Duodenum Smooth Muscle	Duodenum
19	chr2:86093400-86112400	Weak transcription	Colonic Mucosa	Colon
20	chr2:86093600-86111600	Weak transcription	Colon Smooth Muscle	Colon
21	chr2:86093800-86106000	Weak transcription	Sigmoid Colon	Sigmoid Colon
22	chr2:86093800-86113000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr2:86094000-86105400	Weak transcription	NH-A	brain
24	chr2:86094800-86105400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
25	chr2:86094800-86106000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
26	chr2:86095000-86103400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
27	chr2:86095400-86104000	Weak transcription	A549	lung
28	chr2:86096200-86108400	Genic enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr2:86096800-86107600	Enhancers	Brain Hippocampus Middle	brain
30	chr2:86097000-86104400	Weak transcription	Pancreatic Islets	Pancreatic Islet
31	chr2:86097600-86103600	Weak transcription	Skeletal Muscle Male	skeletal muscle
32	chr2:86097600-86105800	Weak transcription	Dnd41	blood
33	chr2:86097600-86106000	Weak transcription	Psoas Muscle	Psoas
34	chr2:86097600-86108600	Weak transcription	Cortex derived primary cultured neurospheres	brain
35	chr2:86097600-86109200	Weak transcription	NHEK	skin
36	chr2:86098600-86103400	Enhancers	Brain Cingulate Gyrus	brain
37	chr2:86098600-86103400	Enhancers	Brain Inferior Temporal Lobe	brain
38	chr2:86099600-86104000	Enhancers	Brain Anterior Caudate	brain
39	chr2:86099600-86106000	Weak transcription	Gastric	stomach
40	chr2:86100200-86103400	Enhancers	Brain Angular Gyrus	brain
41	chr2:86100200-86111800	Weak transcription	K562	blood
42	chr2:86100400-86103600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
43	chr2:86100400-86104600	Weak transcription	Pancreas	Pancrea
44	chr2:86100400-86106000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
45	chr2:86100400-86106000	Weak transcription	Skeletal Muscle Female	skeletal muscle
46	chr2:86100400-86109000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
47	chr2:86101200-86111600	Weak transcription	NHDF-Ad	bronchial
48	chr2:86101400-86104000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
49	chr2:86101400-86108600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
50	chr2:86101800-86103600	Enhancers	Brain Substantia Nigra	brain

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