Variant report

Variant	rs13014890
Chromosome Location	chr2:86068243-86068244
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:86066833..86068409-chr2:86079248..86081040,2	K562	blood:
2	chr2:86062799..86065531-chr2:86067694..86070606,2	MCF-7	breast:
3	chr2:86067734..86070701-chr2:86099975..86102346,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000115525	Chromatin interaction

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10496320	1.00[ASW][hapmap];0.94[CEU][hapmap];0.94[CHB][hapmap];1.00[GIH][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11127003	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11127004	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11127006	0.84[CEU][hapmap];0.88[CHB][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11127007	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11127008	0.83[ASN][1000 genomes]
rs11127009	0.83[ASN][1000 genomes]
rs11694145	0.83[AMR][1000 genomes]
rs12614498	0.93[CHB][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12618873	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12622987	0.94[CEU][hapmap];0.88[CHB][hapmap];1.00[GIH][hapmap];0.96[TSI][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12990400	1.00[YRI][hapmap];0.82[AMR][1000 genomes]
rs13014421	0.83[CEU][hapmap];0.94[CHB][hapmap];1.00[YRI][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13016226	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13033743	0.89[AMR][1000 genomes]
rs17026675	0.94[CEU][hapmap];0.94[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1878905	0.83[ASN][1000 genomes]
rs2280312	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3770097	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3810821	0.84[CEU][hapmap];0.88[CHB][hapmap];1.00[GIH][hapmap];0.91[MKK][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4832016	0.83[ASN][1000 genomes]
rs4832210	0.85[ASN][1000 genomes]
rs56049132	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs56083339	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62147537	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62147538	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62147540	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6547636	0.83[ASN][1000 genomes]
rs6547640	0.83[ASN][1000 genomes]
rs6720161	0.83[ASN][1000 genomes]
rs6750686	0.83[ASN][1000 genomes]
rs6751743	0.83[ASN][1000 genomes]
rs72842060	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72842061	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7558479	0.81[CEU][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7572209	0.84[CEU][hapmap];0.88[CHB][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7587003	0.83[ASN][1000 genomes]

No data

Chromatin state (count:95 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:86039800-86074800	Weak transcription	Aorta	Aorta
2	chr2:86055000-86070800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr2:86055000-86071200	Weak transcription	Psoas Muscle	Psoas
4	chr2:86055000-86080000	Weak transcription	Duodenum Mucosa	Duodenum
5	chr2:86055200-86069200	Weak transcription	Primary T helper cells PMA-I stimulated	--
6	chr2:86055200-86070800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr2:86055200-86073200	Weak transcription	NHDF-Ad	bronchial
8	chr2:86055200-86078200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr2:86055200-86080400	Weak transcription	Colonic Mucosa	Colon
10	chr2:86055400-86069400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
11	chr2:86055400-86071200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr2:86055600-86071400	Weak transcription	Pancreas	Pancrea
13	chr2:86057200-86071200	Weak transcription	Primary hematopoietic stem cells	blood
14	chr2:86057600-86068400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
15	chr2:86057800-86068800	Weak transcription	Dnd41	blood
16	chr2:86059400-86078400	Weak transcription	Rectal Smooth Muscle	rectum
17	chr2:86060600-86070400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
18	chr2:86060600-86074200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
19	chr2:86060800-86071200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
20	chr2:86061000-86070800	Weak transcription	Osteobl	bone
21	chr2:86062000-86074400	Weak transcription	Rectal Mucosa Donor 29	rectum
22	chr2:86062200-86068800	Weak transcription	Duodenum Smooth Muscle	Duodenum
23	chr2:86063200-86070800	Weak transcription	Fetal Stomach	stomach
24	chr2:86063800-86080200	Weak transcription	Rectal Mucosa Donor 31	rectum
25	chr2:86064200-86070800	Weak transcription	Brain Germinal Matrix	brain
26	chr2:86064200-86070800	Weak transcription	Pancreatic Islets	Pancreatic Islet
27	chr2:86064800-86070800	Weak transcription	NH-A	brain
28	chr2:86065000-86073400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr2:86065000-86075400	Strong transcription	Brain Hippocampus Middle	brain
30	chr2:86065000-86075400	Strong transcription	Fetal Muscle Trunk	muscle
31	chr2:86065000-86075800	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
32	chr2:86065000-86078400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
33	chr2:86065200-86069800	Strong transcription	Fetal Muscle Leg	muscle
34	chr2:86065200-86071200	Weak transcription	Sigmoid Colon	Sigmoid Colon
35	chr2:86065200-86078400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
36	chr2:86065200-86080000	Strong transcription	Monocytes-CD14+_RO01746	blood
37	chr2:86065400-86070200	Strong transcription	Thymus	Thymus
38	chr2:86065400-86071200	Strong transcription	Cortex derived primary cultured neurospheres	brain
39	chr2:86065400-86079400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
40	chr2:86065600-86078600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
41	chr2:86065800-86070800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
42	chr2:86065800-86071200	Weak transcription	HSMM	muscle
43	chr2:86065800-86075400	Strong transcription	Liver	Liver
44	chr2:86065800-86078200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
45	chr2:86065800-86078400	Strong transcription	Brain Inferior Temporal Lobe	brain
46	chr2:86066000-86070800	Weak transcription	Fetal Intestine Small	intestine
47	chr2:86066000-86075600	Strong transcription	Primary T helper cells fromperipheralblood	blood
48	chr2:86066000-86080600	Weak transcription	Small Intestine	intestine
49	chr2:86066000-86106200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
50	chr2:86066200-86081400	Weak transcription	Right Ventricle	heart

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