The 2.0 version of rSNPBase

Variant report

Variant rs1518983
Chromosome Location chr2:86142202-86142203
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:46 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr2:86131400-86142400 Weak transcription Esophagus oesophagus
2 chr2:86133200-86142800 Weak transcription Colon Smooth Muscle Colon
3 chr2:86133200-86149200 Weak transcription Stomach Smooth Muscle stomach
4 chr2:86133200-86152000 Weak transcription Skeletal Muscle Female skeletal muscle
5 chr2:86134400-86148000 Weak transcription Thymus Thymus
6 chr2:86135400-86143800 Weak transcription Spleen Spleen
7 chr2:86135400-86148000 Weak transcription Pancreas Pancrea
8 chr2:86135400-86151600 Weak transcription Fetal Muscle Trunk muscle
9 chr2:86135400-86151600 Weak transcription Lung lung
10 chr2:86135400-86152600 Weak transcription Psoas Muscle Psoas
11 chr2:86137400-86143600 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
12 chr2:86138000-86143200 Enhancers Foreskin Fibroblast Primary Cells skin01 Skin
13 chr2:86138200-86151600 Weak transcription Fetal Muscle Leg muscle
14 chr2:86138600-86147400 Weak transcription Fetal Thymus thymus
15 chr2:86139600-86142800 Weak transcription Cortex derived primary cultured neurospheres brain
16 chr2:86139600-86143200 Enhancers Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
17 chr2:86139800-86142400 Weak transcription Stomach Mucosa stomach
18 chr2:86140000-86148000 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
19 chr2:86140400-86144800 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
20 chr2:86141000-86142400 Enhancers K562 blood
21 chr2:86141200-86142600 Enhancers Liver Liver
22 chr2:86141400-86142400 Enhancers Hela-S3 cervix
23 chr2:86141400-86142600 Enhancers H1 Derived Mesenchymal Stem Cells ES cell derived
24 chr2:86141400-86145000 Weak transcription NHEK skin
25 chr2:86141600-86142400 Enhancers Primary B cells from peripheral blood blood
26 chr2:86141600-86142800 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
27 chr2:86141600-86142800 Weak transcription NHDF-Ad bronchial
28 chr2:86141600-86145000 Weak transcription HMEC breast
29 chr2:86141800-86142400 Genic enhancers Brain Hippocampus Middle brain
30 chr2:86141800-86142600 Genic enhancers Foreskin Keratinocyte Primary Cells skin02 Skin
31 chr2:86142000-86142400 ZNF genes & repeats Aorta Aorta
32 chr2:86142000-86142400 Genic enhancers Brain Substantia Nigra brain
33 chr2:86142000-86142400 Weak transcription Right Atrium heart
34 chr2:86142000-86142600 Genic enhancers Foreskin Melanocyte Primary Cells skin01 Skin
35 chr2:86142000-86143400 Enhancers Ovary ovary
36 chr2:86142000-86143600 Enhancers Brain Dorsolateral Prefrontal Cortex brain
37 chr2:86142000-86147200 Weak transcription Adipose Nuclei Adipose
38 chr2:86142200-86142400 Enhancers H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
39 chr2:86142200-86142400 Genic enhancers Brain Inferior Temporal Lobe brain
40 chr2:86142200-86142600 Genic enhancers Foreskin Melanocyte Primary Cells skin03 Skin
41 chr2:86142200-86142600 Genic enhancers Brain Cingulate Gyrus brain
42 chr2:86142200-86143200 Enhancers Breast Myoepithelial Primary Cells Breast
43 chr2:86142200-86143200 Enhancers Brain Angular Gyrus brain
44 chr2:86142200-86143400 Genic enhancers Brain Anterior Caudate brain
45 chr2:86142200-86145000 Weak transcription A549 lung
46 chr2:86142200-86155800 Weak transcription Primary T cells from cord blood blood

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Last update: Aug 31, 2015