Variant report

Variant	rs2577780
Chromosome Location	chr2:86135425-86135426
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:86111166..86115659-chr2:86134509..86137457,4	MCF-7	breast:
2	chr2:86125364..86127332-chr2:86135410..86138199,2	MCF-7	breast:
3	chr2:85764504..85766948-chr2:86135155..86137337,2	K562	blood:
4	chr2:86127269..86128951-chr2:86134327..86136016,2	K562	blood:

Variant related genes	Relation type
ENSG00000168906	Chromatin interaction
ENSG00000115525	Chromatin interaction

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs1135603	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13008291	0.84[ASN][1000 genomes]
rs1401384	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1518983	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1518991	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1543972	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17026750	0.83[EUR][1000 genomes]
rs1878898	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1878899	0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1878904	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2577768	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2577769	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2577770	0.88[ASN][1000 genomes]
rs2577771	0.88[ASN][1000 genomes]
rs2577772	0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2577774	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2577775	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2577777	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2577778	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2577779	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2577786	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2679710	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2679711	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2679712	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2679713	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2679714	0.86[ASN][1000 genomes]
rs2679715	0.86[ASN][1000 genomes]
rs2679716	0.87[ASN][1000 genomes]
rs2679717	0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2679718	0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2679719	0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2679720	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2679721	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2679722	0.84[EUR][1000 genomes]
rs2679725	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs28364794	0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2918014	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2918015	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2918016	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2945823	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2945824	0.84[EUR][1000 genomes]
rs2945825	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2945826	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35153287	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4832216	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4832217	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4832218	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62150576	0.83[ASN][1000 genomes]
rs6734115	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6735629	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6747179	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6747294	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7593080	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs764471	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs954176	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs959313	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]

No data

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:86128600-86141200	Weak transcription	Primary T cells from cord blood	blood
2	chr2:86129800-86137800	Weak transcription	NHDF-Ad	bronchial
3	chr2:86129800-86138000	Weak transcription	Fetal Thymus	thymus
4	chr2:86129800-86141400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr2:86130600-86138000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr2:86131400-86137800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr2:86131400-86142400	Weak transcription	Esophagus	oesophagus
8	chr2:86131800-86141600	Weak transcription	Primary B cells from peripheral blood	blood
9	chr2:86133200-86137600	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr2:86133200-86137800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr2:86133200-86137800	Weak transcription	Brain Cingulate Gyrus	brain
12	chr2:86133200-86137800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr2:86133200-86139200	Weak transcription	Skeletal Muscle Male	skeletal muscle
14	chr2:86133200-86142800	Weak transcription	Colon Smooth Muscle	Colon
15	chr2:86133200-86149200	Weak transcription	Stomach Smooth Muscle	stomach
16	chr2:86133200-86152000	Weak transcription	Skeletal Muscle Female	skeletal muscle
17	chr2:86133800-86136800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr2:86133800-86139000	Weak transcription	Cortex derived primary cultured neurospheres	brain
19	chr2:86134000-86135800	Enhancers	K562	blood
20	chr2:86134000-86136800	Enhancers	HMEC	breast
21	chr2:86134000-86136800	Enhancers	NHEK	skin
22	chr2:86134200-86136000	Enhancers	A549	lung
23	chr2:86134400-86136400	Weak transcription	Brain Anterior Caudate	brain
24	chr2:86134400-86136600	Enhancers	HepG2	liver
25	chr2:86134400-86137200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr2:86134400-86148000	Weak transcription	Thymus	Thymus
27	chr2:86134600-86137800	Weak transcription	Brain Substantia Nigra	brain
28	chr2:86134800-86135600	Enhancers	Breast Myoepithelial Primary Cells	Breast
29	chr2:86134800-86135800	Enhancers	Muscle Satellite Cultured Cells	--
30	chr2:86135000-86135600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr2:86135000-86135600	Enhancers	HSMM	muscle
32	chr2:86135000-86135600	Enhancers	HSMMtube	muscle
33	chr2:86135000-86135800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
34	chr2:86135200-86135800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
35	chr2:86135200-86137400	Weak transcription	Fetal Muscle Leg	muscle
36	chr2:86135200-86138000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chr2:86135200-86138200	Weak transcription	Right Atrium	heart
38	chr2:86135200-86139600	Weak transcription	Stomach Mucosa	stomach
39	chr2:86135400-86136200	Weak transcription	Brain Hippocampus Middle	brain
40	chr2:86135400-86136600	Weak transcription	Brain Angular Gyrus	brain
41	chr2:86135400-86137400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr2:86135400-86137400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr2:86135400-86137400	Weak transcription	Adipose Nuclei	Adipose
44	chr2:86135400-86137400	Weak transcription	Ovary	ovary
45	chr2:86135400-86138200	Weak transcription	Placenta	Placenta
46	chr2:86135400-86138400	Weak transcription	Osteobl	bone
47	chr2:86135400-86138800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
48	chr2:86135400-86143800	Weak transcription	Spleen	Spleen
49	chr2:86135400-86148000	Weak transcription	Pancreas	Pancrea
50	chr2:86135400-86151600	Weak transcription	Fetal Muscle Trunk	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links