Variant report

Variant	rs2577774
Chromosome Location	chr2:86132022-86132023
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:86131881..86134262-chr2:86138041..86140281,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ATOH8-2	chr2:86130995-86132077	XLOC_001558
2	lnc-ATOH8-2	chr2:86130995-86132240	NONHSAT072070

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs1135603	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13008291	0.96[ASN][1000 genomes]
rs1401384	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1518983	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1518991	0.98[AFR][1000 genomes];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1543972	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1878898	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1878899	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1878904	0.98[AFR][1000 genomes];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2577768	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2577769	0.99[AFR][1000 genomes];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2577770	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2577771	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2577772	0.99[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2577775	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2577777	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2577778	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2577779	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2577780	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2577786	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2679710	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2679711	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2679712	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2679713	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2679714	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2679715	0.95[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2679716	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs2679717	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2679718	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2679719	0.99[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2679720	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2679721	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2679725	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs28364794	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2918014	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2918015	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2918016	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2945823	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2945825	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2945826	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35153287	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4832216	0.98[AFR][1000 genomes];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4832217	0.99[AFR][1000 genomes];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4832218	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62150576	0.95[ASN][1000 genomes]
rs6734115	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6735629	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6747179	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6747294	0.92[AFR][1000 genomes];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs764471	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs954176	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs959313	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:86119800-86132200	Weak transcription	Duodenum Smooth Muscle	Duodenum
2	chr2:86120200-86134200	Weak transcription	Monocytes-CD14+_RO01746	blood
3	chr2:86122000-86134400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr2:86123200-86132400	Weak transcription	A549	lung
5	chr2:86123200-86132600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr2:86124400-86134000	Weak transcription	Lung	lung
7	chr2:86128000-86132200	Weak transcription	Spleen	Spleen
8	chr2:86128600-86141200	Weak transcription	Primary T cells from cord blood	blood
9	chr2:86128800-86133200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr2:86128800-86133800	Enhancers	Cortex derived primary cultured neurospheres	brain
11	chr2:86129800-86133200	Enhancers	Brain Anterior Caudate	brain
12	chr2:86129800-86133400	Enhancers	Brain Substantia Nigra	brain
13	chr2:86129800-86137800	Weak transcription	NHDF-Ad	bronchial
14	chr2:86129800-86138000	Weak transcription	Fetal Thymus	thymus
15	chr2:86129800-86141400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr2:86130000-86132400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr2:86130000-86132400	Weak transcription	Osteobl	bone
18	chr2:86130000-86134000	Weak transcription	Primary monocytes fromperipheralblood	blood
19	chr2:86130200-86132400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr2:86130600-86133600	Enhancers	Brain Angular Gyrus	brain
21	chr2:86130600-86138000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr2:86131000-86132200	Weak transcription	Ovary	ovary
23	chr2:86131000-86134400	Weak transcription	Right Atrium	heart
24	chr2:86131200-86132200	Weak transcription	Fetal Muscle Trunk	muscle
25	chr2:86131200-86134000	Weak transcription	K562	blood
26	chr2:86131400-86132200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
27	chr2:86131400-86132800	Bivalent Enhancer	HepG2	liver
28	chr2:86131400-86133200	Enhancers	Breast Myoepithelial Primary Cells	Breast
29	chr2:86131400-86137800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
30	chr2:86131400-86142400	Weak transcription	Esophagus	oesophagus
31	chr2:86131600-86133000	Enhancers	Rectal Smooth Muscle	rectum
32	chr2:86131600-86133200	Enhancers	Brain Inferior Temporal Lobe	brain
33	chr2:86131600-86135400	Enhancers	Brain Hippocampus Middle	brain
34	chr2:86131800-86133200	Enhancers	Adipose Nuclei	Adipose
35	chr2:86131800-86141600	Weak transcription	Primary B cells from peripheral blood	blood
36	chr2:86132000-86132200	Flanking Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
37	chr2:86132000-86132400	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
38	chr2:86132000-86132400	Flanking Active TSS	Brain Cingulate Gyrus	brain
39	chr2:86132000-86132800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr2:86132000-86132800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
41	chr2:86132000-86133200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
42	chr2:86132000-86133200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr2:86132000-86133200	Enhancers	Fetal Muscle Leg	muscle
44	chr2:86132000-86133200	Enhancers	Pancreas	Pancrea
45	chr2:86132000-86133200	Enhancers	Skeletal Muscle Male	skeletal muscle
46	chr2:86132000-86133200	Enhancers	Skeletal Muscle Female	skeletal muscle
47	chr2:86132000-86133200	Enhancers	Stomach Smooth Muscle	stomach
48	chr2:86132000-86133400	Enhancers	Placenta	Placenta
49	chr2:86132000-86135200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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