Variant report

Variant	rs2679725
Chromosome Location	chr2:86141844-86141845
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:86140957..86144673-chr2:86146213..86150354,4	K562	blood:
2	chr2:86140957..86144482-chr2:86147122..86150354,4	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ATOH8-2	chr2:86141408-86144322	XLOC_001558
2	lnc-ATOH8-2	chr2:86141404-86142325	XLOC_001558

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs1135603	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13008291	0.83[ASN][1000 genomes]
rs1401384	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1518983	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1518991	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1543972	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17026750	0.83[EUR][1000 genomes]
rs1878898	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1878899	0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1878904	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2577768	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2577769	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2577770	0.87[ASN][1000 genomes]
rs2577771	0.87[ASN][1000 genomes]
rs2577772	0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2577774	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2577775	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2577777	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2577778	0.80[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2577779	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2577780	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2577786	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2679710	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2679711	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2679712	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2679713	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2679714	0.85[ASN][1000 genomes]
rs2679715	0.85[ASN][1000 genomes]
rs2679716	0.86[ASN][1000 genomes]
rs2679717	0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2679718	0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2679719	0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2679720	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2679721	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2679722	0.84[EUR][1000 genomes]
rs28364794	0.85[EUR][1000 genomes]
rs2918014	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2918015	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2918016	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2945823	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2945824	0.84[EUR][1000 genomes]
rs2945825	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2945826	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35153287	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4832216	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4832217	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4832218	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62150576	0.82[ASN][1000 genomes]
rs6734115	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6735629	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6747179	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6747294	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7593080	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs764471	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs954176	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs959313	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:86131400-86142400	Weak transcription	Esophagus	oesophagus
2	chr2:86133200-86142800	Weak transcription	Colon Smooth Muscle	Colon
3	chr2:86133200-86149200	Weak transcription	Stomach Smooth Muscle	stomach
4	chr2:86133200-86152000	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr2:86134400-86148000	Weak transcription	Thymus	Thymus
6	chr2:86135400-86143800	Weak transcription	Spleen	Spleen
7	chr2:86135400-86148000	Weak transcription	Pancreas	Pancrea
8	chr2:86135400-86151600	Weak transcription	Fetal Muscle Trunk	muscle
9	chr2:86135400-86151600	Weak transcription	Lung	lung
10	chr2:86135400-86152600	Weak transcription	Psoas Muscle	Psoas
11	chr2:86137400-86143600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr2:86138000-86143200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr2:86138200-86142000	Weak transcription	Aorta	Aorta
14	chr2:86138200-86151600	Weak transcription	Fetal Muscle Leg	muscle
15	chr2:86138600-86147400	Weak transcription	Fetal Thymus	thymus
16	chr2:86139200-86142000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
17	chr2:86139400-86142200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
18	chr2:86139600-86142000	Weak transcription	Ovary	ovary
19	chr2:86139600-86142800	Weak transcription	Cortex derived primary cultured neurospheres	brain
20	chr2:86139600-86143200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr2:86139800-86142200	Weak transcription	Brain Angular Gyrus	brain
22	chr2:86139800-86142200	Weak transcription	Brain Anterior Caudate	brain
23	chr2:86139800-86142400	Weak transcription	Stomach Mucosa	stomach
24	chr2:86140000-86142200	Weak transcription	Placenta	Placenta
25	chr2:86140000-86148000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr2:86140200-86142200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr2:86140400-86144800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr2:86140800-86142000	Enhancers	Adipose Nuclei	Adipose
29	chr2:86141000-86142000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
30	chr2:86141000-86142400	Enhancers	K562	blood
31	chr2:86141200-86142200	Strong transcription	Primary T cells from cord blood	blood
32	chr2:86141200-86142200	Strong transcription	Brain Cingulate Gyrus	brain
33	chr2:86141200-86142600	Enhancers	Liver	Liver
34	chr2:86141400-86142000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
35	chr2:86141400-86142200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
36	chr2:86141400-86142400	Enhancers	Hela-S3	cervix
37	chr2:86141400-86142600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
38	chr2:86141400-86145000	Weak transcription	NHEK	skin
39	chr2:86141600-86142000	Strong transcription	Brain Substantia Nigra	brain
40	chr2:86141600-86142200	Enhancers	A549	lung
41	chr2:86141600-86142200	Enhancers	HepG2	liver
42	chr2:86141600-86142400	Enhancers	Primary B cells from peripheral blood	blood
43	chr2:86141600-86142800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr2:86141600-86142800	Weak transcription	NHDF-Ad	bronchial
45	chr2:86141600-86145000	Weak transcription	HMEC	breast
46	chr2:86141800-86142000	Enhancers	Right Atrium	heart
47	chr2:86141800-86142200	Weak transcription	Brain Inferior Temporal Lobe	brain
48	chr2:86141800-86142400	Genic enhancers	Brain Hippocampus Middle	brain
49	chr2:86141800-86142600	Genic enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin

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