Variant report

Variant	rs2577775
Chromosome Location	chr2:86132943-86132944
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:86131881..86134262-chr2:86138041..86140281,2	K562	blood:
2	chr2:86098331..86101203-chr2:86132798..86134488,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ATOH8-2	chr2:86132673-86133268	NONHSAT072072

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs1135603	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13008291	0.96[ASN][1000 genomes]
rs1401384	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1518983	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1518991	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1543972	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1878898	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1878899	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1878904	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2577768	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2577769	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2577770	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2577771	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2577772	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2577774	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2577777	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2577778	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2577779	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2577780	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2577786	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2679710	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2679711	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2679712	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2679713	0.95[AFR][1000 genomes];0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2679714	0.95[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2679715	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2679716	0.86[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs2679717	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2679718	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2679719	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2679720	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2679721	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2679725	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs28364794	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2918014	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2918015	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2918016	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2945823	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2945825	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2945826	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35153287	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4832216	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4832217	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4832218	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62150576	0.95[ASN][1000 genomes]
rs6734115	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6735629	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6747179	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6747294	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7593080	0.81[EUR][1000 genomes]
rs764471	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs954176	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs959313	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:86120200-86134200	Weak transcription	Monocytes-CD14+_RO01746	blood
2	chr2:86122000-86134400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr2:86124400-86134000	Weak transcription	Lung	lung
4	chr2:86128600-86141200	Weak transcription	Primary T cells from cord blood	blood
5	chr2:86128800-86133200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr2:86128800-86133800	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr2:86129800-86133200	Enhancers	Brain Anterior Caudate	brain
8	chr2:86129800-86133400	Enhancers	Brain Substantia Nigra	brain
9	chr2:86129800-86137800	Weak transcription	NHDF-Ad	bronchial
10	chr2:86129800-86138000	Weak transcription	Fetal Thymus	thymus
11	chr2:86129800-86141400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr2:86130000-86134000	Weak transcription	Primary monocytes fromperipheralblood	blood
13	chr2:86130600-86133600	Enhancers	Brain Angular Gyrus	brain
14	chr2:86130600-86138000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr2:86131000-86134400	Weak transcription	Right Atrium	heart
16	chr2:86131200-86134000	Weak transcription	K562	blood
17	chr2:86131400-86133200	Enhancers	Breast Myoepithelial Primary Cells	Breast
18	chr2:86131400-86137800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr2:86131400-86142400	Weak transcription	Esophagus	oesophagus
20	chr2:86131600-86133000	Enhancers	Rectal Smooth Muscle	rectum
21	chr2:86131600-86133200	Enhancers	Brain Inferior Temporal Lobe	brain
22	chr2:86131600-86135400	Enhancers	Brain Hippocampus Middle	brain
23	chr2:86131800-86133200	Enhancers	Adipose Nuclei	Adipose
24	chr2:86131800-86141600	Weak transcription	Primary B cells from peripheral blood	blood
25	chr2:86132000-86133200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr2:86132000-86133200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr2:86132000-86133200	Enhancers	Fetal Muscle Leg	muscle
28	chr2:86132000-86133200	Enhancers	Pancreas	Pancrea
29	chr2:86132000-86133200	Enhancers	Skeletal Muscle Male	skeletal muscle
30	chr2:86132000-86133200	Enhancers	Skeletal Muscle Female	skeletal muscle
31	chr2:86132000-86133200	Enhancers	Stomach Smooth Muscle	stomach
32	chr2:86132000-86133400	Enhancers	Placenta	Placenta
33	chr2:86132000-86135200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr2:86132200-86133000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
35	chr2:86132200-86133000	Enhancers	Duodenum Smooth Muscle	Duodenum
36	chr2:86132200-86133000	Enhancers	Fetal Lung	lung
37	chr2:86132200-86133200	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr2:86132200-86133200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
39	chr2:86132200-86133200	Enhancers	Ovary	ovary
40	chr2:86132200-86133200	Enhancers	Spleen	Spleen
41	chr2:86132200-86134000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
42	chr2:86132400-86133000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
43	chr2:86132400-86133000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
44	chr2:86132400-86133000	Enhancers	A549	lung
45	chr2:86132400-86133200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
46	chr2:86132400-86133200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
47	chr2:86132400-86133200	Enhancers	Brain Cingulate Gyrus	brain
48	chr2:86132400-86133200	Enhancers	Colon Smooth Muscle	Colon
49	chr2:86132400-86133200	Enhancers	HMEC	breast
50	chr2:86132400-86133200	Enhancers	HSMMtube	muscle

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