Variant report

Variant	rs2945826
Chromosome Location	chr2:86139914-86139915
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:86137885..86140851-chr2:86180033..86182072,2	MCF-7	breast:
2	chr2:86131881..86134262-chr2:86138041..86140281,2	K562	blood:

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs1135603	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13008291	0.83[ASN][1000 genomes]
rs1401384	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1518983	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1518991	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1543972	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17026750	0.82[EUR][1000 genomes]
rs1878898	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1878899	0.87[ASN][1000 genomes]
rs1878904	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2577768	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2577769	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2577770	0.87[ASN][1000 genomes]
rs2577771	0.87[ASN][1000 genomes]
rs2577772	0.86[ASN][1000 genomes]
rs2577774	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2577775	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2577777	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2577778	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2577779	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2577780	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2577786	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2679710	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2679711	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2679712	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2679713	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2679714	0.85[ASN][1000 genomes]
rs2679715	0.85[ASN][1000 genomes]
rs2679716	0.86[ASN][1000 genomes]
rs2679717	0.87[ASN][1000 genomes]
rs2679718	0.87[ASN][1000 genomes]
rs2679719	0.87[ASN][1000 genomes]
rs2679720	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2679721	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2679722	0.83[EUR][1000 genomes]
rs2679725	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28364794	0.84[EUR][1000 genomes]
rs2918014	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2918015	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2918016	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2945823	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2945824	0.83[EUR][1000 genomes]
rs2945825	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35153287	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4832216	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4832217	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4832218	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62150576	0.82[ASN][1000 genomes]
rs6734115	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6735629	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6747179	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6747294	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7593080	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs764471	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs954176	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs959313	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]

No data

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:86128600-86141200	Weak transcription	Primary T cells from cord blood	blood
2	chr2:86129800-86141400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr2:86131400-86142400	Weak transcription	Esophagus	oesophagus
4	chr2:86131800-86141600	Weak transcription	Primary B cells from peripheral blood	blood
5	chr2:86133200-86142800	Weak transcription	Colon Smooth Muscle	Colon
6	chr2:86133200-86149200	Weak transcription	Stomach Smooth Muscle	stomach
7	chr2:86133200-86152000	Weak transcription	Skeletal Muscle Female	skeletal muscle
8	chr2:86134400-86148000	Weak transcription	Thymus	Thymus
9	chr2:86135400-86143800	Weak transcription	Spleen	Spleen
10	chr2:86135400-86148000	Weak transcription	Pancreas	Pancrea
11	chr2:86135400-86151600	Weak transcription	Fetal Muscle Trunk	muscle
12	chr2:86135400-86151600	Weak transcription	Lung	lung
13	chr2:86135400-86152600	Weak transcription	Psoas Muscle	Psoas
14	chr2:86137400-86143600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr2:86137800-86140400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr2:86137800-86141600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr2:86137800-86141600	Enhancers	HMEC	breast
18	chr2:86137800-86141600	Enhancers	NHDF-Ad	bronchial
19	chr2:86138000-86140000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr2:86138000-86140600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr2:86138000-86143200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr2:86138200-86140000	Enhancers	Placenta	Placenta
23	chr2:86138200-86142000	Weak transcription	Aorta	Aorta
24	chr2:86138200-86151600	Weak transcription	Fetal Muscle Leg	muscle
25	chr2:86138400-86141400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
26	chr2:86138600-86141200	Weak transcription	Liver	Liver
27	chr2:86138600-86141800	Weak transcription	Right Atrium	heart
28	chr2:86138600-86147400	Weak transcription	Fetal Thymus	thymus
29	chr2:86138800-86140000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr2:86138800-86141400	Enhancers	Muscle Satellite Cultured Cells	--
31	chr2:86139200-86142000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
32	chr2:86139400-86142200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
33	chr2:86139600-86140200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
34	chr2:86139600-86140400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
35	chr2:86139600-86140400	Enhancers	Osteobl	bone
36	chr2:86139600-86141000	Weak transcription	K562	blood
37	chr2:86139600-86141400	Enhancers	NHEK	skin
38	chr2:86139600-86141600	Weak transcription	Brain Substantia Nigra	brain
39	chr2:86139600-86142000	Weak transcription	Ovary	ovary
40	chr2:86139600-86142800	Weak transcription	Cortex derived primary cultured neurospheres	brain
41	chr2:86139600-86143200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr2:86139800-86140200	Weak transcription	HSMM	muscle
43	chr2:86139800-86140800	Weak transcription	Adipose Nuclei	Adipose
44	chr2:86139800-86141000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
45	chr2:86139800-86141000	Weak transcription	A549	lung
46	chr2:86139800-86141200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
47	chr2:86139800-86141200	Weak transcription	Brain Cingulate Gyrus	brain
48	chr2:86139800-86141200	Weak transcription	Brain Hippocampus Middle	brain
49	chr2:86139800-86141400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
50	chr2:86139800-86141400	Weak transcription	Brain Inferior Temporal Lobe	brain

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