Variant report

Variant	rs62150576
Chromosome Location	chr2:86128647-86128648
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1)
CpG islands
(count:0)
Chromatin interactive
region (count:5)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr2:86128598-86128777	K562	blood:	n/a	n/a

No data

(count:5 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr2:86113728..86117711-chr2:86127161..86129318,3	K562	blood:
2	chr2:86127578..86130184-chr2:86130997..86134221,3	K562	blood:
3	chr2:86127269..86128951-chr2:86134327..86136016,2	K562	blood:
4	chr2:86115517..86117569-chr2:86127124..86130005,2	MCF-7	breast:
5	chr2:86123033..86125341-chr2:86126269..86129259,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000272564	TF binding region
ENSG00000272564	Chromatin interaction
ENSG00000232504	Chromatin interaction
ENSG00000115525	Chromatin interaction

rs_ID	r²[population]
rs1135603	0.95[ASN][1000 genomes]
rs13008291	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1401384	0.95[ASN][1000 genomes]
rs1518983	0.82[ASN][1000 genomes]
rs1518991	0.91[ASN][1000 genomes]
rs1543972	0.95[ASN][1000 genomes]
rs1878898	0.94[ASN][1000 genomes]
rs1878899	0.95[ASN][1000 genomes]
rs1878904	0.91[ASN][1000 genomes]
rs2577768	0.95[ASN][1000 genomes]
rs2577769	0.95[ASN][1000 genomes]
rs2577770	0.95[ASN][1000 genomes]
rs2577771	0.95[ASN][1000 genomes]
rs2577772	0.93[ASN][1000 genomes]
rs2577774	0.95[ASN][1000 genomes]
rs2577775	0.95[ASN][1000 genomes]
rs2577777	0.83[ASN][1000 genomes]
rs2577778	0.83[ASN][1000 genomes]
rs2577779	0.83[ASN][1000 genomes]
rs2577780	0.83[ASN][1000 genomes]
rs2577786	0.82[ASN][1000 genomes]
rs2679710	0.95[ASN][1000 genomes]
rs2679711	0.96[ASN][1000 genomes]
rs2679712	0.95[ASN][1000 genomes]
rs2679713	0.95[ASN][1000 genomes]
rs2679714	0.92[ASN][1000 genomes]
rs2679715	0.92[ASN][1000 genomes]
rs2679716	0.92[ASN][1000 genomes]
rs2679717	0.95[ASN][1000 genomes]
rs2679718	0.95[ASN][1000 genomes]
rs2679719	0.91[ASN][1000 genomes]
rs2679720	0.83[ASN][1000 genomes]
rs2679721	0.83[ASN][1000 genomes]
rs2679725	0.82[ASN][1000 genomes]
rs28364794	0.88[ASN][1000 genomes]
rs2918014	0.82[ASN][1000 genomes]
rs2918015	0.82[ASN][1000 genomes]
rs2918016	0.82[ASN][1000 genomes]
rs2945825	0.82[ASN][1000 genomes]
rs2945826	0.82[ASN][1000 genomes]
rs4832216	0.91[ASN][1000 genomes]
rs4832217	0.94[ASN][1000 genomes]
rs4832218	0.95[ASN][1000 genomes]
rs6734115	0.92[ASN][1000 genomes]
rs6735629	0.94[ASN][1000 genomes]
rs6747179	0.95[ASN][1000 genomes]
rs6747294	0.92[ASN][1000 genomes]
rs764471	0.95[ASN][1000 genomes]
rs954176	0.95[ASN][1000 genomes]
rs959313	0.95[ASN][1000 genomes]

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:86118600-86131000	Weak transcription	Thymus	Thymus
2	chr2:86119800-86132200	Weak transcription	Duodenum Smooth Muscle	Duodenum
3	chr2:86120200-86134200	Weak transcription	Monocytes-CD14+_RO01746	blood
4	chr2:86120800-86131400	Weak transcription	Pancreas	Pancrea
5	chr2:86121400-86128800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr2:86121400-86132000	Weak transcription	Placenta	Placenta
7	chr2:86121600-86129000	Weak transcription	Fetal Muscle Leg	muscle
8	chr2:86121600-86129400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr2:86121600-86131800	Weak transcription	Adipose Nuclei	Adipose
10	chr2:86121800-86128800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr2:86122000-86134400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr2:86123200-86128800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr2:86123200-86132400	Weak transcription	A549	lung
14	chr2:86123200-86132600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr2:86124400-86129000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr2:86124400-86134000	Weak transcription	Lung	lung
17	chr2:86126000-86128800	Enhancers	Brain Hippocampus Middle	brain
18	chr2:86126000-86129000	Enhancers	Brain Substantia Nigra	brain
19	chr2:86126400-86129000	Enhancers	Brain Inferior Temporal Lobe	brain
20	chr2:86126800-86129400	Enhancers	Brain Angular Gyrus	brain
21	chr2:86127200-86132000	Weak transcription	Skeletal Muscle Female	skeletal muscle
22	chr2:86127400-86128800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
23	chr2:86127400-86132000	Weak transcription	Skeletal Muscle Male	skeletal muscle
24	chr2:86127600-86130800	Weak transcription	K562	blood
25	chr2:86128000-86130000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
26	chr2:86128000-86132200	Weak transcription	Spleen	Spleen
27	chr2:86128200-86128800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
28	chr2:86128400-86131400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
29	chr2:86128600-86128800	Enhancers	Brain Anterior Caudate	brain
30	chr2:86128600-86129600	Flanking Active TSS	Brain Cingulate Gyrus	brain
31	chr2:86128600-86141200	Weak transcription	Primary T cells from cord blood	blood

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