Variant report

Variant	rs2945824
Chromosome Location	chr2:86135300-86135301
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:86111166..86115659-chr2:86134509..86137457,4	MCF-7	breast:
2	chr2:85764504..85766948-chr2:86135155..86137337,2	K562	blood:
3	chr2:86127269..86128951-chr2:86134327..86136016,2	K562	blood:

Variant related genes	Relation type
ENSG00000115525	Chromatin interaction
ENSG00000168906	Chromatin interaction

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs10181978	0.81[AMR][1000 genomes]
rs10185207	0.82[AMR][1000 genomes]
rs10192998	0.82[AMR][1000 genomes]
rs10193207	0.82[AMR][1000 genomes]
rs1025704	0.82[AMR][1000 genomes]
rs1025705	0.82[AMR][1000 genomes]
rs1025706	0.82[AMR][1000 genomes]
rs1025707	0.82[AMR][1000 genomes]
rs1025708	0.82[AMR][1000 genomes]
rs11682312	0.82[AMR][1000 genomes]
rs11693421	0.82[AMR][1000 genomes]
rs11693423	0.82[AMR][1000 genomes]
rs11693435	0.82[AMR][1000 genomes]
rs12616165	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12714157	0.82[AMR][1000 genomes]
rs12714158	0.82[AMR][1000 genomes]
rs1438156	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1518983	0.84[EUR][1000 genomes]
rs17026750	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17026756	0.82[AMR][1000 genomes]
rs1866244	0.82[AMR][1000 genomes]
rs2008559	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2083170	0.88[AMR][1000 genomes]
rs2164878	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2366950	0.89[AMR][1000 genomes]
rs2577777	0.84[EUR][1000 genomes]
rs2577778	0.84[EUR][1000 genomes]
rs2577779	0.84[EUR][1000 genomes]
rs2577780	0.84[EUR][1000 genomes]
rs2577785	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2577786	0.83[EUR][1000 genomes]
rs2679720	0.84[EUR][1000 genomes]
rs2679721	0.84[EUR][1000 genomes]
rs2679722	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2679725	0.84[EUR][1000 genomes]
rs2918014	0.84[EUR][1000 genomes]
rs2918015	0.82[EUR][1000 genomes]
rs2918016	0.83[EUR][1000 genomes]
rs2945823	0.84[EUR][1000 genomes]
rs2945825	0.84[EUR][1000 genomes]
rs2945826	0.83[EUR][1000 genomes]
rs35153287	0.83[EUR][1000 genomes]
rs4331504	0.92[AMR][1000 genomes]
rs4832222	0.82[AMR][1000 genomes]
rs4832226	0.82[AMR][1000 genomes]
rs6547647	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6718537	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs71411844	0.82[AMR][1000 genomes]
rs7576135	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7593080	0.87[ASN][1000 genomes]
rs893445	0.88[AMR][1000 genomes]
rs893447	0.82[AMR][1000 genomes]
rs893448	0.82[AMR][1000 genomes]
rs893449	0.82[AMR][1000 genomes]
rs9309626	0.82[AMR][1000 genomes]
rs9309627	0.82[AMR][1000 genomes]
rs934828	0.82[AMR][1000 genomes]

No data

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:86128600-86141200	Weak transcription	Primary T cells from cord blood	blood
2	chr2:86129800-86137800	Weak transcription	NHDF-Ad	bronchial
3	chr2:86129800-86138000	Weak transcription	Fetal Thymus	thymus
4	chr2:86129800-86141400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr2:86130600-86138000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr2:86131400-86137800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr2:86131400-86142400	Weak transcription	Esophagus	oesophagus
8	chr2:86131600-86135400	Enhancers	Brain Hippocampus Middle	brain
9	chr2:86131800-86141600	Weak transcription	Primary B cells from peripheral blood	blood
10	chr2:86133200-86137600	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr2:86133200-86137800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr2:86133200-86137800	Weak transcription	Brain Cingulate Gyrus	brain
13	chr2:86133200-86137800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr2:86133200-86139200	Weak transcription	Skeletal Muscle Male	skeletal muscle
15	chr2:86133200-86142800	Weak transcription	Colon Smooth Muscle	Colon
16	chr2:86133200-86149200	Weak transcription	Stomach Smooth Muscle	stomach
17	chr2:86133200-86152000	Weak transcription	Skeletal Muscle Female	skeletal muscle
18	chr2:86133800-86135400	Enhancers	Placenta	Placenta
19	chr2:86133800-86136800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr2:86133800-86139000	Weak transcription	Cortex derived primary cultured neurospheres	brain
21	chr2:86134000-86135400	Enhancers	Lung	lung
22	chr2:86134000-86135800	Enhancers	K562	blood
23	chr2:86134000-86136800	Enhancers	HMEC	breast
24	chr2:86134000-86136800	Enhancers	NHEK	skin
25	chr2:86134200-86135400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr2:86134200-86136000	Enhancers	A549	lung
27	chr2:86134400-86135400	Enhancers	Osteobl	bone
28	chr2:86134400-86136400	Weak transcription	Brain Anterior Caudate	brain
29	chr2:86134400-86136600	Enhancers	HepG2	liver
30	chr2:86134400-86137200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr2:86134400-86148000	Weak transcription	Thymus	Thymus
32	chr2:86134600-86137800	Weak transcription	Brain Substantia Nigra	brain
33	chr2:86134800-86135400	Enhancers	Adipose Nuclei	Adipose
34	chr2:86134800-86135600	Enhancers	Breast Myoepithelial Primary Cells	Breast
35	chr2:86134800-86135800	Enhancers	Muscle Satellite Cultured Cells	--
36	chr2:86135000-86135400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
37	chr2:86135000-86135400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
38	chr2:86135000-86135400	Enhancers	Brain Angular Gyrus	brain
39	chr2:86135000-86135400	Enhancers	Fetal Muscle Trunk	muscle
40	chr2:86135000-86135400	Enhancers	Ovary	ovary
41	chr2:86135000-86135400	Enhancers	Pancreas	Pancrea
42	chr2:86135000-86135400	Enhancers	Right Ventricle	heart
43	chr2:86135000-86135400	Enhancers	Spleen	Spleen
44	chr2:86135000-86135400	Enhancers	NHLF	lung
45	chr2:86135000-86135600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
46	chr2:86135000-86135600	Enhancers	HSMM	muscle
47	chr2:86135000-86135600	Enhancers	HSMMtube	muscle
48	chr2:86135000-86135800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
49	chr2:86135200-86135400	Enhancers	Psoas Muscle	Psoas
50	chr2:86135200-86135800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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