The 2.0 version of rSNPBase

Variant report

Variant rs2164878
Chromosome Location chr2:86153855-86153856
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:55 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr2:86142200-86155800 Weak transcription Primary T cells from cord blood blood
2 chr2:86142400-86157800 Weak transcription Aorta Aorta
3 chr2:86147200-86155000 Enhancers Brain Hippocampus Middle brain
4 chr2:86148600-86156200 Weak transcription NH-A brain
5 chr2:86149400-86157400 Weak transcription Pancreas Pancrea
6 chr2:86149800-86157200 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
7 chr2:86149800-86157400 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
8 chr2:86150400-86155000 Enhancers Brain Substantia Nigra brain
9 chr2:86150400-86155200 Enhancers Brain Inferior Temporal Lobe brain
10 chr2:86150400-86155200 Enhancers A549 lung
11 chr2:86150800-86155000 Enhancers Brain Cingulate Gyrus brain
12 chr2:86151000-86154800 Enhancers Foreskin Keratinocyte Primary Cells skin02 Skin
13 chr2:86151000-86155000 Enhancers Brain Angular Gyrus brain
14 chr2:86151600-86155000 Enhancers Foreskin Melanocyte Primary Cells skin01 Skin
15 chr2:86151600-86155200 Enhancers Brain Anterior Caudate brain
16 chr2:86151600-86156400 Enhancers Placenta Placenta
17 chr2:86151800-86154000 Enhancers Skeletal Muscle Male skeletal muscle
18 chr2:86151800-86155200 Enhancers Spleen Spleen
19 chr2:86152000-86154400 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
20 chr2:86152200-86154000 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
21 chr2:86152200-86154800 Weak transcription Primary Natural Killer cells fromperipheralblood blood
22 chr2:86152200-86163400 Weak transcription Fetal Muscle Trunk muscle
23 chr2:86152400-86154000 Enhancers Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
24 chr2:86152400-86154800 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
25 chr2:86152400-86155200 Weak transcription Primary hematopoietic stem cells short term culture blood
26 chr2:86152400-86156200 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
27 chr2:86152400-86163000 Weak transcription Rectal Smooth Muscle rectum
28 chr2:86152600-86154000 Weak transcription Muscle Satellite Cultured Cells --
29 chr2:86152600-86154000 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
30 chr2:86152600-86154200 Weak transcription HSMM muscle
31 chr2:86152600-86154400 Weak transcription Gastric stomach
32 chr2:86152800-86154200 Weak transcription Fetal Adrenal Gland Adrenal Gland
33 chr2:86152800-86161000 Weak transcription Liver Liver
34 chr2:86152800-86162400 Weak transcription Right Atrium heart
35 chr2:86153000-86156200 Weak transcription Ovary ovary
36 chr2:86153000-86157200 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
37 chr2:86153200-86154200 Weak transcription Fetal Thymus thymus
38 chr2:86153200-86154600 Weak transcription Left Ventricle heart
39 chr2:86153200-86154600 Weak transcription Lung lung
40 chr2:86153200-86157200 Weak transcription Fetal Muscle Leg muscle
41 chr2:86153400-86158800 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
42 chr2:86153600-86154400 Enhancers Stomach Mucosa stomach
43 chr2:86153600-86154600 Enhancers NHEK skin
44 chr2:86153600-86154800 Enhancers Breast Myoepithelial Primary Cells Breast
45 chr2:86153600-86154800 Enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
46 chr2:86153800-86154400 Flanking Active TSS Hela-S3 cervix
47 chr2:86153800-86154600 Enhancers Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
48 chr2:86153800-86154800 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
49 chr2:86153800-86154800 Enhancers Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
50 chr2:86153800-86154800 Enhancers Adipose Nuclei Adipose

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Last update: Aug 31, 2015