Variant report

Variant	rs934828
Chromosome Location	chr2:86154744-86154745
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:86147713..86150880-chr2:86153499..86156772,3	K562	blood:
2	chr2:86146663..86150858-chr2:86151745..86155490,4	K562	blood:

Extended variants
information (count: 75 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:75)

rs_ID	r²[population]
rs10179419	0.82[JPT][hapmap]
rs10181978	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10185207	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10185280	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10192998	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10193207	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1025704	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1025705	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1025706	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1025707	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1025708	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10496319	0.81[JPT][hapmap]
rs11681961	0.82[JPT][hapmap]
rs11682312	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11693421	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11693423	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11693435	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12613609	0.81[CEU][hapmap];0.82[JPT][hapmap]
rs12616165	0.90[AMR][1000 genomes]
rs12714154	0.96[CEU][hapmap];0.91[CHB][hapmap];0.86[JPT][hapmap]
rs12714157	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12714158	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13020072	0.81[JPT][hapmap]
rs13025142	0.84[CEU][hapmap]
rs13401298	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13422640	0.81[CEU][hapmap];0.82[JPT][hapmap]
rs1401383	0.96[CEU][hapmap];0.91[CHB][hapmap];0.86[JPT][hapmap]
rs1401385	0.96[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap]
rs1438156	0.92[AMR][1000 genomes]
rs1518990	0.81[JPT][hapmap]
rs1533605	0.84[CEU][hapmap]
rs17026684	0.82[JPT][hapmap]
rs17026750	0.84[AMR][1000 genomes]
rs17026756	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1866244	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2008559	0.93[AMR][1000 genomes]
rs2030275	0.82[JPT][hapmap]
rs2083170	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2164878	0.93[AMR][1000 genomes]
rs2176627	0.81[CEU][hapmap];0.82[JPT][hapmap]
rs2280316	0.82[JPT][hapmap]
rs2366947	0.84[CEU][hapmap];0.81[JPT][hapmap]
rs2366950	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2679722	0.82[AMR][1000 genomes]
rs2945824	0.82[AMR][1000 genomes]
rs4331504	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4553826	0.84[CEU][hapmap];0.81[JPT][hapmap]
rs4613279	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4832015	0.84[CEU][hapmap];0.81[JPT][hapmap]
rs4832017	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4832213	0.81[CEU][hapmap];0.82[JPT][hapmap]
rs4832219	0.96[CEU][hapmap];0.91[CHB][hapmap];0.85[JPT][hapmap]
rs4832222	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4832226	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4832227	0.93[ASN][1000 genomes]
rs6547637	0.81[CEU][hapmap]
rs6547647	0.92[AMR][1000 genomes]
rs6714363	0.86[JPT][hapmap]
rs6716233	0.82[JPT][hapmap]
rs6718537	0.91[AMR][1000 genomes]
rs6721125	0.84[CEU][hapmap];0.81[JPT][hapmap]
rs6726662	0.96[CEU][hapmap];0.92[CHB][hapmap];0.82[JPT][hapmap]
rs6733593	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6734488	0.81[CEU][hapmap];0.82[JPT][hapmap]
rs6753350	0.81[CEU][hapmap];0.82[JPT][hapmap]
rs71411844	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7561062	0.82[JPT][hapmap]
rs7576135	0.90[AMR][1000 genomes]
rs7586560	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs893445	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs893447	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs893448	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs893449	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9309626	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9309627	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:86142200-86155800	Weak transcription	Primary T cells from cord blood	blood
2	chr2:86142400-86157800	Weak transcription	Aorta	Aorta
3	chr2:86147200-86155000	Enhancers	Brain Hippocampus Middle	brain
4	chr2:86148600-86156200	Weak transcription	NH-A	brain
5	chr2:86149400-86157400	Weak transcription	Pancreas	Pancrea
6	chr2:86149800-86157200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr2:86149800-86157400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr2:86150400-86155000	Enhancers	Brain Substantia Nigra	brain
9	chr2:86150400-86155200	Enhancers	Brain Inferior Temporal Lobe	brain
10	chr2:86150400-86155200	Enhancers	A549	lung
11	chr2:86150800-86155000	Enhancers	Brain Cingulate Gyrus	brain
12	chr2:86151000-86154800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr2:86151000-86155000	Enhancers	Brain Angular Gyrus	brain
14	chr2:86151600-86155000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr2:86151600-86155200	Enhancers	Brain Anterior Caudate	brain
16	chr2:86151600-86156400	Enhancers	Placenta	Placenta
17	chr2:86151800-86155200	Enhancers	Spleen	Spleen
18	chr2:86152200-86154800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
19	chr2:86152200-86163400	Weak transcription	Fetal Muscle Trunk	muscle
20	chr2:86152400-86154800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr2:86152400-86155200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
22	chr2:86152400-86156200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr2:86152400-86163000	Weak transcription	Rectal Smooth Muscle	rectum
24	chr2:86152800-86161000	Weak transcription	Liver	Liver
25	chr2:86152800-86162400	Weak transcription	Right Atrium	heart
26	chr2:86153000-86156200	Weak transcription	Ovary	ovary
27	chr2:86153000-86157200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr2:86153200-86157200	Weak transcription	Fetal Muscle Leg	muscle
29	chr2:86153400-86158800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr2:86153600-86154800	Enhancers	Breast Myoepithelial Primary Cells	Breast
31	chr2:86153600-86154800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr2:86153800-86154800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
33	chr2:86153800-86154800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr2:86153800-86154800	Enhancers	Adipose Nuclei	Adipose
35	chr2:86153800-86154800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
36	chr2:86153800-86154800	Weak transcription	Right Ventricle	heart
37	chr2:86153800-86154800	Enhancers	HMEC	breast
38	chr2:86153800-86154800	Enhancers	Osteobl	bone
39	chr2:86153800-86155200	Enhancers	K562	blood
40	chr2:86154000-86155400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
41	chr2:86154200-86155600	Enhancers	Fetal Thymus	thymus
42	chr2:86154400-86154800	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
43	chr2:86154400-86155000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
44	chr2:86154400-86155000	Enhancers	Hela-S3	cervix
45	chr2:86154400-86155400	Weak transcription	HSMM	muscle
46	chr2:86154400-86155800	Weak transcription	Primary monocytes fromperipheralblood	blood
47	chr2:86154400-86161000	Weak transcription	Stomach Mucosa	stomach
48	chr2:86154600-86154800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
49	chr2:86154600-86154800	Enhancers	Left Ventricle	heart
50	chr2:86154600-86154800	Enhancers	Lung	lung

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