Variant report

Variant	rs6716233
Chromosome Location	chr2:86082593-86082594
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:86074682..86077567-chr2:86080979..86083283,2	K562	blood:
2	chr2:86073388..86076182-chr2:86080776..86083283,2	K562	blood:

Variant related genes	Relation type
ENSG00000115525	Chromatin interaction

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10175609	0.93[ASN][1000 genomes]
rs10179419	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap]
rs10203518	0.94[ASN][1000 genomes]
rs10496319	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1054936	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11679283	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11681961	0.92[CEU][hapmap];0.96[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11687628	0.94[ASN][1000 genomes]
rs12613609	0.87[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs13020072	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13025142	0.82[ASN][1000 genomes]
rs13028295	0.95[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13034643	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13422640	0.83[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs1401385	0.85[JPT][hapmap]
rs1518990	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1533605	0.86[CHB][hapmap];0.95[JPT][hapmap];0.94[ASN][1000 genomes]
rs17026684	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2030275	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2176627	0.87[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs2280316	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2366947	0.86[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs34403285	0.90[AMR][1000 genomes]
rs35477883	1.00[ASN][1000 genomes]
rs35493914	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4553826	0.86[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs4832015	0.86[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs4832213	0.87[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs62147514	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62147536	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6547634	0.97[ASN][1000 genomes]
rs6547637	0.86[CHB][hapmap];0.91[JPT][hapmap];0.94[ASN][1000 genomes]
rs6721125	0.86[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs6734488	0.86[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs6753350	0.87[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs6759239	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7561062	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

No data

Chromatin state (count:96 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:86066000-86106200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr2:86066400-86091400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr2:86067000-86099000	Weak transcription	Gastric	stomach
4	chr2:86067200-86087000	Weak transcription	Fetal Brain Male	brain
5	chr2:86067400-86084800	Weak transcription	Ovary	ovary
6	chr2:86067600-86086200	Weak transcription	Fetal Brain Female	brain
7	chr2:86071800-86096200	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr2:86072000-86090400	Strong transcription	Cortex derived primary cultured neurospheres	brain
9	chr2:86072000-86096800	Weak transcription	Psoas Muscle	Psoas
10	chr2:86073000-86083600	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr2:86074000-86089800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr2:86074600-86089600	Weak transcription	NH-A	brain
13	chr2:86074800-86086200	Weak transcription	HSMM	muscle
14	chr2:86075400-86114000	Weak transcription	Aorta	Aorta
15	chr2:86076000-86090400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr2:86077200-86088600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr2:86079000-86092000	Weak transcription	Esophagus	oesophagus
18	chr2:86079200-86090400	Strong transcription	A549	lung
19	chr2:86079200-86092000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr2:86079200-86092600	Weak transcription	Colon Smooth Muscle	Colon
21	chr2:86079200-86092800	Weak transcription	Stomach Smooth Muscle	stomach
22	chr2:86079400-86083200	Weak transcription	HMEC	breast
23	chr2:86079600-86087800	Weak transcription	Osteobl	bone
24	chr2:86079600-86106200	Weak transcription	Brain Germinal Matrix	brain
25	chr2:86080000-86091600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr2:86080200-86088600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr2:86080400-86085000	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
28	chr2:86080400-86093000	Weak transcription	HSMMtube	muscle
29	chr2:86080800-86093600	Weak transcription	K562	blood
30	chr2:86081000-86082600	Weak transcription	Liver	Liver
31	chr2:86081000-86084800	Weak transcription	Fetal Stomach	stomach
32	chr2:86081000-86086000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr2:86081000-86086200	Strong transcription	Brain Angular Gyrus	brain
34	chr2:86081000-86088000	Weak transcription	Fetal Intestine Large	intestine
35	chr2:86081000-86112400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
36	chr2:86081600-86082600	Enhancers	Primary T cells fromperipheralblood	blood
37	chr2:86081600-86082600	Weak transcription	Brain Hippocampus Middle	brain
38	chr2:86081600-86082600	Weak transcription	Brain Inferior Temporal Lobe	brain
39	chr2:86081600-86083000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
40	chr2:86081600-86083000	Genic enhancers	Fetal Thymus	thymus
41	chr2:86081600-86083800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
42	chr2:86081600-86084000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
43	chr2:86081600-86084200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
44	chr2:86081600-86084200	Weak transcription	Skeletal Muscle Male	skeletal muscle
45	chr2:86081600-86084800	Weak transcription	Skeletal Muscle Female	skeletal muscle
46	chr2:86081600-86085000	Weak transcription	Lung	lung
47	chr2:86081600-86085000	Weak transcription	Sigmoid Colon	Sigmoid Colon
48	chr2:86081600-86086000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
49	chr2:86081600-86088200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
50	chr2:86081600-86088200	Strong transcription	Fetal Muscle Leg	muscle

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