Variant report

Variant	rs13028295
Chromosome Location	chr2:86076024-86076025
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:86075421..86077051-chr2:86332502..86335469,2	K562	blood:
2	chr2:86075670..86078465-chr2:86079454..86081924,2	MCF-7	breast:
3	chr2:86073388..86076182-chr2:86080776..86083283,2	K562	blood:

Variant related genes	Relation type
ENSG00000068654	Chromatin interaction
ENSG00000132300	Chromatin interaction
ENSG00000115525	Chromatin interaction

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10175609	0.91[ASN][1000 genomes]
rs10179419	0.87[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.86[YRI][hapmap]
rs10203518	0.92[ASN][1000 genomes]
rs10496319	0.91[ASW][hapmap];0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.92[LWK][hapmap];0.89[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];0.86[YRI][hapmap];0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1054936	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11679283	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11681961	0.87[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11687628	0.92[ASN][1000 genomes]
rs11694145	0.83[AFR][1000 genomes]
rs12613609	0.86[CHB][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs12714154	0.81[JPT][hapmap]
rs13020072	0.91[ASW][hapmap];0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.92[LWK][hapmap];0.94[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];0.86[YRI][hapmap];0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13025142	0.89[CHD][hapmap];0.82[ASN][1000 genomes]
rs13034643	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13422640	0.82[CHB][hapmap];0.95[JPT][hapmap];0.92[ASN][1000 genomes]
rs1401383	0.81[JPT][hapmap]
rs1401385	0.85[JPT][hapmap]
rs1518990	0.91[ASW][hapmap];0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.92[LWK][hapmap];0.94[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];0.86[YRI][hapmap];0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1533605	0.86[CHB][hapmap];0.98[CHD][hapmap];0.95[JPT][hapmap];0.92[ASN][1000 genomes]
rs17026684	0.82[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.86[YRI][hapmap];0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2030275	0.95[CEU][hapmap];0.91[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];0.95[JPT][hapmap];0.94[MEX][hapmap];0.97[TSI][hapmap];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2176627	0.86[CHB][hapmap];0.95[JPT][hapmap];0.94[ASN][1000 genomes]
rs2280316	0.87[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.91[YRI][hapmap];0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2366947	0.86[CHB][hapmap];0.98[CHD][hapmap];0.95[JPT][hapmap];0.94[ASN][1000 genomes]
rs34403285	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs35477883	0.98[ASN][1000 genomes]
rs35493914	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4553826	0.86[CHB][hapmap];0.98[CHD][hapmap];0.95[JPT][hapmap];0.92[ASN][1000 genomes]
rs4832015	0.86[CHB][hapmap];0.98[CHD][hapmap];0.95[JPT][hapmap];0.92[ASN][1000 genomes]
rs4832213	0.86[CHB][hapmap];0.95[JPT][hapmap];0.92[ASN][1000 genomes]
rs4832219	0.80[JPT][hapmap]
rs62147514	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62147536	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6547634	0.94[ASN][1000 genomes]
rs6547637	0.86[CHB][hapmap];0.85[JPT][hapmap];0.92[ASN][1000 genomes]
rs6716233	0.95[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6721125	0.86[CHB][hapmap];0.98[CHD][hapmap];0.95[JPT][hapmap];0.92[ASN][1000 genomes]
rs6726662	0.81[JPT][hapmap]
rs6734488	0.86[CHB][hapmap];0.95[JPT][hapmap];0.92[ASN][1000 genomes]
rs6753350	0.86[CHB][hapmap];0.95[JPT][hapmap];0.92[ASN][1000 genomes]
rs6759239	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7561062	0.95[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.82[YRI][hapmap];0.82[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]

No data

Chromatin state (count:101 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:86055000-86080000	Weak transcription	Duodenum Mucosa	Duodenum
2	chr2:86055200-86078200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr2:86055200-86080400	Weak transcription	Colonic Mucosa	Colon
4	chr2:86059400-86078400	Weak transcription	Rectal Smooth Muscle	rectum
5	chr2:86063800-86080200	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr2:86065000-86078400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr2:86065200-86078400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr2:86065200-86080000	Strong transcription	Monocytes-CD14+_RO01746	blood
9	chr2:86065400-86079400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr2:86065600-86078600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr2:86065800-86078200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr2:86065800-86078400	Strong transcription	Brain Inferior Temporal Lobe	brain
13	chr2:86066000-86080600	Weak transcription	Small Intestine	intestine
14	chr2:86066000-86106200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr2:86066200-86081400	Weak transcription	Right Ventricle	heart
16	chr2:86066400-86091400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr2:86067000-86099000	Weak transcription	Gastric	stomach
18	chr2:86067200-86087000	Weak transcription	Fetal Brain Male	brain
19	chr2:86067400-86080400	Weak transcription	Left Ventricle	heart
20	chr2:86067400-86084800	Weak transcription	Ovary	ovary
21	chr2:86067600-86076800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
22	chr2:86067600-86078600	Weak transcription	Stomach Smooth Muscle	stomach
23	chr2:86067600-86078800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr2:86067600-86086200	Weak transcription	Fetal Brain Female	brain
25	chr2:86067800-86080000	Weak transcription	K562	blood
26	chr2:86068600-86077400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
27	chr2:86068800-86078400	Strong transcription	Primary B cells from cord blood	blood
28	chr2:86069400-86080400	Weak transcription	Stomach Mucosa	stomach
29	chr2:86069600-86078400	Weak transcription	Colon Smooth Muscle	Colon
30	chr2:86070400-86078400	Strong transcription	Brain Anterior Caudate	brain
31	chr2:86070600-86078600	Strong transcription	Fetal Muscle Leg	muscle
32	chr2:86070800-86080200	Weak transcription	HUVEC	blood vessel
33	chr2:86071000-86080600	Weak transcription	Fetal Intestine Large	intestine
34	chr2:86071200-86079400	Strong transcription	Dnd41	blood
35	chr2:86071400-86080800	Weak transcription	Fetal Intestine Small	intestine
36	chr2:86071600-86077600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr2:86071600-86078400	Weak transcription	HMEC	breast
38	chr2:86071800-86078600	Strong transcription	Thymus	Thymus
39	chr2:86071800-86080800	Weak transcription	Sigmoid Colon	Sigmoid Colon
40	chr2:86071800-86096200	Weak transcription	Pancreatic Islets	Pancreatic Islet
41	chr2:86072000-86090400	Strong transcription	Cortex derived primary cultured neurospheres	brain
42	chr2:86072000-86096800	Weak transcription	Psoas Muscle	Psoas
43	chr2:86072200-86077400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
44	chr2:86072200-86080000	Strong transcription	Primary monocytes fromperipheralblood	blood
45	chr2:86072800-86079400	Weak transcription	Primary hematopoietic stem cells	blood
46	chr2:86073000-86076800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
47	chr2:86073000-86083600	Weak transcription	HUES6 Cell Line	embryonic stem cell
48	chr2:86073600-86076800	Strong transcription	NHEK	skin
49	chr2:86073800-86078400	Enhancers	GM12878-XiMat	blood
50	chr2:86073800-86078600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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