Variant report

Variant	rs6547634
Chromosome Location	chr2:86079696-86079697
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:86075670..86078465-chr2:86079454..86081924,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000115525	Chromatin interaction

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10175609	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10203518	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10496319	0.97[ASN][1000 genomes]
rs1054936	0.96[ASN][1000 genomes]
rs11127002	0.85[AMR][1000 genomes]
rs11679283	0.94[ASN][1000 genomes]
rs11681961	0.94[ASN][1000 genomes]
rs11687628	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12478916	0.81[EUR][1000 genomes]
rs12613609	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13020072	0.93[ASN][1000 genomes]
rs13025142	0.96[AFR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13028295	0.94[ASN][1000 genomes]
rs13034643	0.92[ASN][1000 genomes]
rs13422640	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1518990	0.96[ASN][1000 genomes]
rs1533605	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1607466	0.80[AMR][1000 genomes]
rs17026684	0.97[ASN][1000 genomes]
rs2030275	0.94[ASN][1000 genomes]
rs2176627	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2280316	0.92[ASN][1000 genomes]
rs2366946	0.80[AMR][1000 genomes]
rs2366947	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35477883	0.97[ASN][1000 genomes]
rs35493914	0.96[ASN][1000 genomes]
rs4553826	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4832015	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4832213	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4832215	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62147514	0.92[ASN][1000 genomes]
rs62147536	0.93[ASN][1000 genomes]
rs6547637	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6707472	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6716233	0.97[ASN][1000 genomes]
rs6721125	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6734488	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6753350	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6759239	0.87[ASN][1000 genomes]
rs7561062	0.96[ASN][1000 genomes]

No data

Chromatin state (count:101 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:86055000-86080000	Weak transcription	Duodenum Mucosa	Duodenum
2	chr2:86055200-86080400	Weak transcription	Colonic Mucosa	Colon
3	chr2:86063800-86080200	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr2:86065200-86080000	Strong transcription	Monocytes-CD14+_RO01746	blood
5	chr2:86066000-86080600	Weak transcription	Small Intestine	intestine
6	chr2:86066000-86106200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr2:86066200-86081400	Weak transcription	Right Ventricle	heart
8	chr2:86066400-86091400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr2:86067000-86099000	Weak transcription	Gastric	stomach
10	chr2:86067200-86087000	Weak transcription	Fetal Brain Male	brain
11	chr2:86067400-86080400	Weak transcription	Left Ventricle	heart
12	chr2:86067400-86084800	Weak transcription	Ovary	ovary
13	chr2:86067600-86086200	Weak transcription	Fetal Brain Female	brain
14	chr2:86067800-86080000	Weak transcription	K562	blood
15	chr2:86069400-86080400	Weak transcription	Stomach Mucosa	stomach
16	chr2:86070800-86080200	Weak transcription	HUVEC	blood vessel
17	chr2:86071000-86080600	Weak transcription	Fetal Intestine Large	intestine
18	chr2:86071400-86080800	Weak transcription	Fetal Intestine Small	intestine
19	chr2:86071800-86080800	Weak transcription	Sigmoid Colon	Sigmoid Colon
20	chr2:86071800-86096200	Weak transcription	Pancreatic Islets	Pancreatic Islet
21	chr2:86072000-86090400	Strong transcription	Cortex derived primary cultured neurospheres	brain
22	chr2:86072000-86096800	Weak transcription	Psoas Muscle	Psoas
23	chr2:86072200-86080000	Strong transcription	Primary monocytes fromperipheralblood	blood
24	chr2:86073000-86083600	Weak transcription	HUES6 Cell Line	embryonic stem cell
25	chr2:86074000-86089800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr2:86074600-86080000	Weak transcription	HSMMtube	muscle
27	chr2:86074600-86080800	Weak transcription	Duodenum Smooth Muscle	Duodenum
28	chr2:86074600-86089600	Weak transcription	NH-A	brain
29	chr2:86074800-86086200	Weak transcription	HSMM	muscle
30	chr2:86075200-86082400	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
31	chr2:86075400-86080000	Weak transcription	Pancreas	Pancrea
32	chr2:86075400-86114000	Weak transcription	Aorta	Aorta
33	chr2:86076000-86090400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
34	chr2:86076800-86081000	Strong transcription	Liver	Liver
35	chr2:86076800-86081400	Weak transcription	Right Atrium	heart
36	chr2:86077200-86088600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
37	chr2:86077400-86079800	Genic enhancers	Primary mononuclear cells fromperipheralblood	Blood
38	chr2:86077400-86080000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
39	chr2:86077600-86080200	Genic enhancers	Fetal Thymus	thymus
40	chr2:86077600-86082400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr2:86078200-86080000	Genic enhancers	Brain Hippocampus Middle	brain
42	chr2:86078200-86080200	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
43	chr2:86078200-86081000	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
44	chr2:86078400-86079800	Genic enhancers	Brain Cingulate Gyrus	brain
45	chr2:86078400-86080000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
46	chr2:86078400-86080000	Genic enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
47	chr2:86078400-86080000	Genic enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
48	chr2:86078400-86080200	Genic enhancers	Brain Inferior Temporal Lobe	brain
49	chr2:86078400-86080400	Strong transcription	Lung	lung
50	chr2:86078400-86080800	Genic enhancers	Brain Substantia Nigra	brain

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