Variant report

Variant	rs6759239
Chromosome Location	chr2:86085558-86085559
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:86084824..86090316-chr2:86093337..86098199,7	K562	blood:

Variant related genes	Relation type
ENSG00000115525	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10175609	0.85[ASN][1000 genomes]
rs10203518	0.86[ASN][1000 genomes]
rs10496319	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1054936	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11679283	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11681961	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11687628	0.86[ASN][1000 genomes]
rs12613609	0.84[ASN][1000 genomes]
rs13020072	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13028295	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13034643	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13422640	0.86[ASN][1000 genomes]
rs1518990	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1533605	0.86[ASN][1000 genomes]
rs17026684	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2030275	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2176627	0.88[ASN][1000 genomes]
rs2280316	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2366947	0.88[ASN][1000 genomes]
rs34403285	0.92[AMR][1000 genomes]
rs35477883	0.90[ASN][1000 genomes]
rs35493914	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4553826	0.86[ASN][1000 genomes]
rs4832015	0.86[ASN][1000 genomes]
rs4832213	0.86[ASN][1000 genomes]
rs62147514	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62147536	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6547634	0.87[ASN][1000 genomes]
rs6547637	0.86[ASN][1000 genomes]
rs6716233	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6721125	0.86[ASN][1000 genomes]
rs6734488	0.86[ASN][1000 genomes]
rs6753350	0.86[ASN][1000 genomes]
rs7561062	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]

No data

Chromatin state (count:93 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:86066000-86106200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr2:86066400-86091400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr2:86067000-86099000	Weak transcription	Gastric	stomach
4	chr2:86067200-86087000	Weak transcription	Fetal Brain Male	brain
5	chr2:86067600-86086200	Weak transcription	Fetal Brain Female	brain
6	chr2:86071800-86096200	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr2:86072000-86090400	Strong transcription	Cortex derived primary cultured neurospheres	brain
8	chr2:86072000-86096800	Weak transcription	Psoas Muscle	Psoas
9	chr2:86074000-86089800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr2:86074600-86089600	Weak transcription	NH-A	brain
11	chr2:86074800-86086200	Weak transcription	HSMM	muscle
12	chr2:86075400-86114000	Weak transcription	Aorta	Aorta
13	chr2:86076000-86090400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr2:86077200-86088600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr2:86079000-86092000	Weak transcription	Esophagus	oesophagus
16	chr2:86079200-86090400	Strong transcription	A549	lung
17	chr2:86079200-86092000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr2:86079200-86092600	Weak transcription	Colon Smooth Muscle	Colon
19	chr2:86079200-86092800	Weak transcription	Stomach Smooth Muscle	stomach
20	chr2:86079600-86087800	Weak transcription	Osteobl	bone
21	chr2:86079600-86106200	Weak transcription	Brain Germinal Matrix	brain
22	chr2:86080000-86091600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr2:86080200-86088600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr2:86080400-86093000	Weak transcription	HSMMtube	muscle
25	chr2:86080800-86093600	Weak transcription	K562	blood
26	chr2:86081000-86086000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr2:86081000-86086200	Strong transcription	Brain Angular Gyrus	brain
28	chr2:86081000-86088000	Weak transcription	Fetal Intestine Large	intestine
29	chr2:86081000-86112400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
30	chr2:86081600-86086000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr2:86081600-86088200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr2:86081600-86088200	Strong transcription	Fetal Muscle Leg	muscle
33	chr2:86081600-86092600	Weak transcription	Rectal Smooth Muscle	rectum
34	chr2:86081600-86092800	Weak transcription	Duodenum Smooth Muscle	Duodenum
35	chr2:86081600-86093000	Weak transcription	Colonic Mucosa	Colon
36	chr2:86081600-86095000	Weak transcription	Pancreas	Pancrea
37	chr2:86081600-86099200	Weak transcription	Left Ventricle	heart
38	chr2:86081600-86100600	Weak transcription	NHDF-Ad	bronchial
39	chr2:86081800-86092000	Weak transcription	Fetal Intestine Small	intestine
40	chr2:86081800-86092000	Weak transcription	Small Intestine	intestine
41	chr2:86081800-86093000	Weak transcription	Duodenum Mucosa	Duodenum
42	chr2:86081800-86093000	Weak transcription	Rectal Mucosa Donor 31	rectum
43	chr2:86081800-86093000	Weak transcription	Stomach Mucosa	stomach
44	chr2:86082000-86088600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
45	chr2:86082000-86094000	Strong transcription	Monocytes-CD14+_RO01746	blood
46	chr2:86082000-86099000	Weak transcription	Right Ventricle	heart
47	chr2:86082400-86085800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
48	chr2:86082400-86087800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
49	chr2:86082400-86088200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
50	chr2:86082600-86086600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood

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