Variant report

Variant	rs1533605
Chromosome Location	chr2:86092253-86092254
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10175609	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10179419	0.86[CHB][hapmap];0.95[JPT][hapmap]
rs10203518	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10496319	0.86[CHB][hapmap];0.98[CHD][hapmap];0.95[JPT][hapmap];0.94[ASN][1000 genomes]
rs1054936	0.94[ASN][1000 genomes]
rs11127002	0.85[AMR][1000 genomes]
rs11679283	0.92[ASN][1000 genomes]
rs11681961	0.91[CHB][hapmap];0.95[JPT][hapmap];0.97[ASN][1000 genomes]
rs11687628	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12478916	0.96[CEU][hapmap];0.81[EUR][1000 genomes]
rs12613609	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12714154	0.88[CEU][hapmap];0.92[GIH][hapmap];0.81[JPT][hapmap];0.83[MEX][hapmap]
rs13020072	0.86[CHB][hapmap];0.98[CHD][hapmap];0.95[JPT][hapmap];0.91[ASN][1000 genomes]
rs13025142	1.00[CEU][hapmap];0.87[CHB][hapmap];0.91[CHD][hapmap];0.97[GIH][hapmap];1.00[TSI][hapmap];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13028295	0.86[CHB][hapmap];0.98[CHD][hapmap];0.95[JPT][hapmap];0.92[ASN][1000 genomes]
rs13034643	0.90[ASN][1000 genomes]
rs13422640	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1401383	0.88[CEU][hapmap];0.92[GIH][hapmap];0.81[JPT][hapmap];0.87[MEX][hapmap]
rs1401385	0.88[CEU][hapmap];0.92[GIH][hapmap];0.81[JPT][hapmap];0.87[MEX][hapmap]
rs1518990	0.86[CHB][hapmap];0.98[CHD][hapmap];0.95[JPT][hapmap];0.94[ASN][1000 genomes]
rs17026684	0.86[CHB][hapmap];0.95[JPT][hapmap];0.94[ASN][1000 genomes]
rs2030275	0.86[CHB][hapmap];0.98[CHD][hapmap];0.95[JPT][hapmap];0.97[ASN][1000 genomes]
rs2176627	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.86[YRI][hapmap];0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2280316	0.86[CHB][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs2366947	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.96[MEX][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2679722	0.83[ASW][hapmap];0.89[LWK][hapmap];0.86[YRI][hapmap]
rs35477883	0.94[ASN][1000 genomes]
rs35493914	0.94[ASN][1000 genomes]
rs4553826	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4832015	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4832213	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4832215	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4832219	0.88[CEU][hapmap];0.92[GIH][hapmap];0.80[JPT][hapmap];0.87[MEX][hapmap]
rs62147514	0.90[ASN][1000 genomes]
rs62147536	0.93[ASN][1000 genomes]
rs6547634	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6547637	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.86[YRI][hapmap];0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6707472	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6716233	0.86[CHB][hapmap];0.95[JPT][hapmap];0.94[ASN][1000 genomes]
rs6721125	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.96[MEX][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6726662	0.88[CEU][hapmap];0.81[JPT][hapmap]
rs6734488	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.86[YRI][hapmap];0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6753350	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6759239	0.86[ASN][1000 genomes]
rs7561062	1.00[CHB][hapmap];0.95[JPT][hapmap];0.95[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1533605	CAPG	cis	cerebellum	SCAN

Chromatin state (count:91 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:86066000-86106200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr2:86067000-86099000	Weak transcription	Gastric	stomach
3	chr2:86071800-86096200	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr2:86072000-86096800	Weak transcription	Psoas Muscle	Psoas
5	chr2:86075400-86114000	Weak transcription	Aorta	Aorta
6	chr2:86079200-86092600	Weak transcription	Colon Smooth Muscle	Colon
7	chr2:86079200-86092800	Weak transcription	Stomach Smooth Muscle	stomach
8	chr2:86079600-86106200	Weak transcription	Brain Germinal Matrix	brain
9	chr2:86080400-86093000	Weak transcription	HSMMtube	muscle
10	chr2:86080800-86093600	Weak transcription	K562	blood
11	chr2:86081000-86112400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr2:86081600-86092600	Weak transcription	Rectal Smooth Muscle	rectum
13	chr2:86081600-86092800	Weak transcription	Duodenum Smooth Muscle	Duodenum
14	chr2:86081600-86093000	Weak transcription	Colonic Mucosa	Colon
15	chr2:86081600-86095000	Weak transcription	Pancreas	Pancrea
16	chr2:86081600-86099200	Weak transcription	Left Ventricle	heart
17	chr2:86081600-86100600	Weak transcription	NHDF-Ad	bronchial
18	chr2:86081800-86093000	Weak transcription	Duodenum Mucosa	Duodenum
19	chr2:86081800-86093000	Weak transcription	Rectal Mucosa Donor 31	rectum
20	chr2:86081800-86093000	Weak transcription	Stomach Mucosa	stomach
21	chr2:86082000-86094000	Strong transcription	Monocytes-CD14+_RO01746	blood
22	chr2:86082000-86099000	Weak transcription	Right Ventricle	heart
23	chr2:86086800-86113000	Weak transcription	Rectal Mucosa Donor 29	rectum
24	chr2:86087400-86093000	Weak transcription	Skeletal Muscle Female	skeletal muscle
25	chr2:86087400-86096800	Weak transcription	NHEK	skin
26	chr2:86087400-86101800	Weak transcription	Fetal Brain Female	brain
27	chr2:86088200-86099000	Weak transcription	Adipose Nuclei	Adipose
28	chr2:86088400-86105400	Weak transcription	Osteobl	bone
29	chr2:86088600-86111600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr2:86089000-86092600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
31	chr2:86089000-86102600	Weak transcription	Primary hematopoietic stem cells	blood
32	chr2:86089400-86094800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
33	chr2:86089800-86092600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
34	chr2:86089800-86092600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
35	chr2:86089800-86100000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
36	chr2:86089800-86106000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
37	chr2:86089800-86106000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
38	chr2:86090200-86092400	Weak transcription	NH-A	brain
39	chr2:86090400-86092400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
40	chr2:86090400-86092400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
41	chr2:86090400-86092800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
42	chr2:86090400-86093000	Weak transcription	Ovary	ovary
43	chr2:86090400-86094600	Weak transcription	A549	lung
44	chr2:86090400-86096000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
45	chr2:86090400-86097400	Weak transcription	Cortex derived primary cultured neurospheres	brain
46	chr2:86090400-86099800	Weak transcription	Spleen	Spleen
47	chr2:86090400-86102600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
48	chr2:86090400-86104600	Weak transcription	Liver	Liver
49	chr2:86090600-86092600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
50	chr2:86090600-86092800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood

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