Variant report

Variant	rs2280316
Chromosome Location	chr2:86071393-86071394
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:86068855..86071872-chr2:86074354..86077076,3	K562	blood:
2	chr2:86070509..86072865-chr2:86108197..86110713,2	K562	blood:

Variant related genes	Relation type
ENSG00000115525	Chromatin interaction

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10175609	0.89[ASN][1000 genomes]
rs10179419	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap]
rs10203518	0.90[ASN][1000 genomes]
rs10496319	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1054936	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11679283	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11681961	1.00[CEU][hapmap];0.96[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11687628	0.90[ASN][1000 genomes]
rs11694145	0.85[AFR][1000 genomes]
rs11900944	0.80[ASN][1000 genomes]
rs12613609	0.87[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs12990400	0.87[CEU][hapmap]
rs13020072	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13028295	0.87[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.91[YRI][hapmap];0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13034643	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13422640	0.83[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs1401385	0.85[JPT][hapmap]
rs1518990	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1533605	0.86[CHB][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs17026684	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2030275	0.91[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2176627	0.87[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs2366947	0.86[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs34403285	0.99[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs35477883	0.96[ASN][1000 genomes]
rs35493914	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4553826	0.86[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs4832015	0.86[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs4832213	0.87[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs62147514	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62147536	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6547634	0.92[ASN][1000 genomes]
rs6547637	0.86[CHB][hapmap];0.91[JPT][hapmap];0.90[ASN][1000 genomes]
rs6716233	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6721125	0.86[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs6734488	0.86[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs6753350	0.87[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs6759239	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7561062	0.91[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]

No data

Chromatin state (count:100 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:86039800-86074800	Weak transcription	Aorta	Aorta
2	chr2:86055000-86080000	Weak transcription	Duodenum Mucosa	Duodenum
3	chr2:86055200-86073200	Weak transcription	NHDF-Ad	bronchial
4	chr2:86055200-86078200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr2:86055200-86080400	Weak transcription	Colonic Mucosa	Colon
6	chr2:86055600-86071400	Weak transcription	Pancreas	Pancrea
7	chr2:86059400-86078400	Weak transcription	Rectal Smooth Muscle	rectum
8	chr2:86060600-86074200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
9	chr2:86062000-86074400	Weak transcription	Rectal Mucosa Donor 29	rectum
10	chr2:86063800-86080200	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr2:86065000-86073400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr2:86065000-86075400	Strong transcription	Brain Hippocampus Middle	brain
13	chr2:86065000-86075400	Strong transcription	Fetal Muscle Trunk	muscle
14	chr2:86065000-86075800	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr2:86065000-86078400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr2:86065200-86078400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr2:86065200-86080000	Strong transcription	Monocytes-CD14+_RO01746	blood
18	chr2:86065400-86079400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr2:86065600-86078600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
20	chr2:86065800-86075400	Strong transcription	Liver	Liver
21	chr2:86065800-86078200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr2:86065800-86078400	Strong transcription	Brain Inferior Temporal Lobe	brain
23	chr2:86066000-86075600	Strong transcription	Primary T helper cells fromperipheralblood	blood
24	chr2:86066000-86080600	Weak transcription	Small Intestine	intestine
25	chr2:86066000-86106200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
26	chr2:86066200-86081400	Weak transcription	Right Ventricle	heart
27	chr2:86066400-86071600	Strong transcription	Primary monocytes fromperipheralblood	blood
28	chr2:86066400-86091400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr2:86066600-86073800	Weak transcription	Placenta Amnion	Placenta Amnion
30	chr2:86066800-86072000	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
31	chr2:86066800-86072000	Strong transcription	NHEK	skin
32	chr2:86067000-86072800	Strong transcription	Primary T cells fromperipheralblood	blood
33	chr2:86067000-86074200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
34	chr2:86067000-86074400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
35	chr2:86067000-86099000	Weak transcription	Gastric	stomach
36	chr2:86067200-86087000	Weak transcription	Fetal Brain Male	brain
37	chr2:86067400-86071400	Weak transcription	Spleen	Spleen
38	chr2:86067400-86073400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
39	chr2:86067400-86080400	Weak transcription	Left Ventricle	heart
40	chr2:86067400-86084800	Weak transcription	Ovary	ovary
41	chr2:86067600-86071600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
42	chr2:86067600-86074200	Strong transcription	Fetal Thymus	thymus
43	chr2:86067600-86074400	Weak transcription	Placenta	Placenta
44	chr2:86067600-86076800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
45	chr2:86067600-86078600	Weak transcription	Stomach Smooth Muscle	stomach
46	chr2:86067600-86078800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
47	chr2:86067600-86086200	Weak transcription	Fetal Brain Female	brain
48	chr2:86067800-86075400	Strong transcription	Primary T cells from cord blood	blood
49	chr2:86067800-86080000	Weak transcription	K562	blood
50	chr2:86068600-86073800	Strong transcription	Primary B cells from peripheral blood	blood

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