Variant report

Variant	rs10179419
Chromosome Location	chr2:86084220-86084221
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10496319	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs11681961	1.00[CEU][hapmap];0.96[CHB][hapmap];1.00[JPT][hapmap]
rs12613609	0.87[CHB][hapmap];1.00[JPT][hapmap]
rs12990400	0.87[CEU][hapmap]
rs13020072	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs13028295	0.87[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.86[YRI][hapmap]
rs13422640	0.83[CHB][hapmap];1.00[JPT][hapmap]
rs1401385	0.85[JPT][hapmap]
rs1518990	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs1533605	0.86[CHB][hapmap];0.95[JPT][hapmap]
rs17026684	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs2030275	0.91[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap]
rs2176627	0.87[CHB][hapmap];1.00[JPT][hapmap]
rs2280316	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap]
rs2366947	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs4553826	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs4832015	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs4832213	0.87[CHB][hapmap];1.00[JPT][hapmap]
rs6547637	0.86[CHB][hapmap];0.91[JPT][hapmap]
rs6716233	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap]
rs6721125	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs6734488	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs6753350	0.87[CHB][hapmap];1.00[JPT][hapmap]
rs7561062	0.91[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap]

No data

Chromatin state (count:93 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:86066000-86106200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr2:86066400-86091400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr2:86067000-86099000	Weak transcription	Gastric	stomach
4	chr2:86067200-86087000	Weak transcription	Fetal Brain Male	brain
5	chr2:86067400-86084800	Weak transcription	Ovary	ovary
6	chr2:86067600-86086200	Weak transcription	Fetal Brain Female	brain
7	chr2:86071800-86096200	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr2:86072000-86090400	Strong transcription	Cortex derived primary cultured neurospheres	brain
9	chr2:86072000-86096800	Weak transcription	Psoas Muscle	Psoas
10	chr2:86074000-86089800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr2:86074600-86089600	Weak transcription	NH-A	brain
12	chr2:86074800-86086200	Weak transcription	HSMM	muscle
13	chr2:86075400-86114000	Weak transcription	Aorta	Aorta
14	chr2:86076000-86090400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr2:86077200-86088600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr2:86079000-86092000	Weak transcription	Esophagus	oesophagus
17	chr2:86079200-86090400	Strong transcription	A549	lung
18	chr2:86079200-86092000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr2:86079200-86092600	Weak transcription	Colon Smooth Muscle	Colon
20	chr2:86079200-86092800	Weak transcription	Stomach Smooth Muscle	stomach
21	chr2:86079600-86087800	Weak transcription	Osteobl	bone
22	chr2:86079600-86106200	Weak transcription	Brain Germinal Matrix	brain
23	chr2:86080000-86091600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr2:86080200-86088600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr2:86080400-86085000	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
26	chr2:86080400-86093000	Weak transcription	HSMMtube	muscle
27	chr2:86080800-86093600	Weak transcription	K562	blood
28	chr2:86081000-86084800	Weak transcription	Fetal Stomach	stomach
29	chr2:86081000-86086000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr2:86081000-86086200	Strong transcription	Brain Angular Gyrus	brain
31	chr2:86081000-86088000	Weak transcription	Fetal Intestine Large	intestine
32	chr2:86081000-86112400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
33	chr2:86081600-86084800	Weak transcription	Skeletal Muscle Female	skeletal muscle
34	chr2:86081600-86085000	Weak transcription	Lung	lung
35	chr2:86081600-86085000	Weak transcription	Sigmoid Colon	Sigmoid Colon
36	chr2:86081600-86086000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
37	chr2:86081600-86088200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr2:86081600-86088200	Strong transcription	Fetal Muscle Leg	muscle
39	chr2:86081600-86092600	Weak transcription	Rectal Smooth Muscle	rectum
40	chr2:86081600-86092800	Weak transcription	Duodenum Smooth Muscle	Duodenum
41	chr2:86081600-86093000	Weak transcription	Colonic Mucosa	Colon
42	chr2:86081600-86095000	Weak transcription	Pancreas	Pancrea
43	chr2:86081600-86099200	Weak transcription	Left Ventricle	heart
44	chr2:86081600-86100600	Weak transcription	NHDF-Ad	bronchial
45	chr2:86081800-86092000	Weak transcription	Fetal Intestine Small	intestine
46	chr2:86081800-86092000	Weak transcription	Small Intestine	intestine
47	chr2:86081800-86093000	Weak transcription	Duodenum Mucosa	Duodenum
48	chr2:86081800-86093000	Weak transcription	Rectal Mucosa Donor 31	rectum
49	chr2:86081800-86093000	Weak transcription	Stomach Mucosa	stomach
50	chr2:86082000-86084600	Weak transcription	NHEK	skin

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