Variant report

Variant	rs13020072
Chromosome Location	chr2:86074512-86074513
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:86073388..86076182-chr2:86080776..86083283,2	K562	blood:

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10175609	0.90[ASN][1000 genomes]
rs10179419	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs10203518	0.91[ASN][1000 genomes]
rs10496319	1.00[ASW][hapmap];0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.94[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1054936	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11679283	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11681961	0.91[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11687628	0.90[ASN][1000 genomes]
rs12613609	0.86[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs13025142	0.89[CHD][hapmap];0.80[ASN][1000 genomes]
rs13028295	0.91[ASW][hapmap];0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.92[LWK][hapmap];0.94[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];0.86[YRI][hapmap];0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13034643	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13422640	0.82[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs1401385	0.85[JPT][hapmap]
rs1518990	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1533605	0.86[CHB][hapmap];0.98[CHD][hapmap];0.95[JPT][hapmap];0.91[ASN][1000 genomes]
rs17026684	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2030275	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2176627	0.86[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs2280316	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2366947	0.86[CHB][hapmap];0.98[CHD][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs34403285	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs35477883	0.97[ASN][1000 genomes]
rs35493914	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4553826	0.86[CHB][hapmap];0.98[CHD][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs4832015	0.86[CHB][hapmap];0.98[CHD][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs4832213	0.86[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs62147514	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62147536	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6547634	0.93[ASN][1000 genomes]
rs6547637	0.86[CHB][hapmap];0.90[JPT][hapmap];0.91[ASN][1000 genomes]
rs6716233	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6721125	0.86[CHB][hapmap];0.98[CHD][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs6734488	0.86[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs6753350	0.86[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs6759239	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7561062	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]

No data

Chromatin state (count:101 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:86039800-86074800	Weak transcription	Aorta	Aorta
2	chr2:86055000-86080000	Weak transcription	Duodenum Mucosa	Duodenum
3	chr2:86055200-86078200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr2:86055200-86080400	Weak transcription	Colonic Mucosa	Colon
5	chr2:86059400-86078400	Weak transcription	Rectal Smooth Muscle	rectum
6	chr2:86063800-86080200	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr2:86065000-86075400	Strong transcription	Brain Hippocampus Middle	brain
8	chr2:86065000-86075400	Strong transcription	Fetal Muscle Trunk	muscle
9	chr2:86065000-86075800	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr2:86065000-86078400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr2:86065200-86078400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr2:86065200-86080000	Strong transcription	Monocytes-CD14+_RO01746	blood
13	chr2:86065400-86079400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr2:86065600-86078600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
15	chr2:86065800-86075400	Strong transcription	Liver	Liver
16	chr2:86065800-86078200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr2:86065800-86078400	Strong transcription	Brain Inferior Temporal Lobe	brain
18	chr2:86066000-86075600	Strong transcription	Primary T helper cells fromperipheralblood	blood
19	chr2:86066000-86080600	Weak transcription	Small Intestine	intestine
20	chr2:86066000-86106200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr2:86066200-86081400	Weak transcription	Right Ventricle	heart
22	chr2:86066400-86091400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr2:86067000-86099000	Weak transcription	Gastric	stomach
24	chr2:86067200-86087000	Weak transcription	Fetal Brain Male	brain
25	chr2:86067400-86080400	Weak transcription	Left Ventricle	heart
26	chr2:86067400-86084800	Weak transcription	Ovary	ovary
27	chr2:86067600-86076800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
28	chr2:86067600-86078600	Weak transcription	Stomach Smooth Muscle	stomach
29	chr2:86067600-86078800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr2:86067600-86086200	Weak transcription	Fetal Brain Female	brain
31	chr2:86067800-86075400	Strong transcription	Primary T cells from cord blood	blood
32	chr2:86067800-86080000	Weak transcription	K562	blood
33	chr2:86068600-86077400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
34	chr2:86068800-86075400	Strong transcription	A549	lung
35	chr2:86068800-86078400	Strong transcription	Primary B cells from cord blood	blood
36	chr2:86069400-86075400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
37	chr2:86069400-86080400	Weak transcription	Stomach Mucosa	stomach
38	chr2:86069600-86078400	Weak transcription	Colon Smooth Muscle	Colon
39	chr2:86070200-86075400	Strong transcription	Brain Cingulate Gyrus	brain
40	chr2:86070400-86078400	Strong transcription	Brain Anterior Caudate	brain
41	chr2:86070600-86074800	Strong transcription	Skeletal Muscle Female	skeletal muscle
42	chr2:86070600-86075200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
43	chr2:86070600-86078600	Strong transcription	Fetal Muscle Leg	muscle
44	chr2:86070800-86075200	Strong transcription	Brain Substantia Nigra	brain
45	chr2:86070800-86075400	Strong transcription	Adipose Nuclei	Adipose
46	chr2:86070800-86075400	Strong transcription	Brain Angular Gyrus	brain
47	chr2:86070800-86075400	Strong transcription	Lung	lung
48	chr2:86070800-86080200	Weak transcription	HUVEC	blood vessel
49	chr2:86071000-86080600	Weak transcription	Fetal Intestine Large	intestine
50	chr2:86071200-86074600	Enhancers	HSMMtube	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links