Variant report

Variant	rs10496319
Chromosome Location	chr2:86079214-86079215
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	STAT3	chr2:86079057-86079466	GM12878	blood:	n/a	chr2:86079192-86079203 chr2:86079424-86079435
2	EBF1	chr2:86079024-86079511	GM12878	blood:	n/a	n/a
3	BHLHE40	chr2:86079143-86079580	GM12878	blood:	n/a	chr2:86079387-86079400 chr2:86079389-86079398 chr2:86079389-86079398

Variant related genes	Relation type
ST3GAL5	TF binding region

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10175609	0.93[ASN][1000 genomes]
rs10179419	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs10203518	0.94[ASN][1000 genomes]
rs1054936	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11679283	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11681961	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11687628	0.94[ASN][1000 genomes]
rs12613609	0.86[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs12990400	0.86[CEU][hapmap]
rs13020072	1.00[ASW][hapmap];0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.94[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13025142	0.89[CHD][hapmap];0.82[ASN][1000 genomes]
rs13028295	0.91[ASW][hapmap];0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.92[LWK][hapmap];0.89[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];0.86[YRI][hapmap];0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13034643	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13422640	0.82[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs1401385	0.85[JPT][hapmap]
rs1518990	1.00[ASW][hapmap];0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.94[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1533605	0.86[CHB][hapmap];0.98[CHD][hapmap];0.95[JPT][hapmap];0.94[ASN][1000 genomes]
rs17026684	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2030275	0.91[CEU][hapmap];0.91[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.97[TSI][hapmap];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2176627	0.86[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs2280316	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2366947	0.86[CHB][hapmap];0.98[CHD][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs34403285	0.92[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs35477883	1.00[ASN][1000 genomes]
rs35493914	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4553826	0.86[CHB][hapmap];0.98[CHD][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs4832015	0.86[CHB][hapmap];0.98[CHD][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs4832213	0.86[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs62147514	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62147536	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6547634	0.97[ASN][1000 genomes]
rs6547637	0.86[CHB][hapmap];0.90[JPT][hapmap];0.94[ASN][1000 genomes]
rs6716233	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6721125	0.86[CHB][hapmap];0.98[CHD][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs6734488	0.86[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs6753350	0.86[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs6759239	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7561062	0.91[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]

No data

Chromatin state (count:101 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:86055000-86080000	Weak transcription	Duodenum Mucosa	Duodenum
2	chr2:86055200-86080400	Weak transcription	Colonic Mucosa	Colon
3	chr2:86063800-86080200	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr2:86065200-86080000	Strong transcription	Monocytes-CD14+_RO01746	blood
5	chr2:86065400-86079400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr2:86066000-86080600	Weak transcription	Small Intestine	intestine
7	chr2:86066000-86106200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr2:86066200-86081400	Weak transcription	Right Ventricle	heart
9	chr2:86066400-86091400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr2:86067000-86099000	Weak transcription	Gastric	stomach
11	chr2:86067200-86087000	Weak transcription	Fetal Brain Male	brain
12	chr2:86067400-86080400	Weak transcription	Left Ventricle	heart
13	chr2:86067400-86084800	Weak transcription	Ovary	ovary
14	chr2:86067600-86086200	Weak transcription	Fetal Brain Female	brain
15	chr2:86067800-86080000	Weak transcription	K562	blood
16	chr2:86069400-86080400	Weak transcription	Stomach Mucosa	stomach
17	chr2:86070800-86080200	Weak transcription	HUVEC	blood vessel
18	chr2:86071000-86080600	Weak transcription	Fetal Intestine Large	intestine
19	chr2:86071200-86079400	Strong transcription	Dnd41	blood
20	chr2:86071400-86080800	Weak transcription	Fetal Intestine Small	intestine
21	chr2:86071800-86080800	Weak transcription	Sigmoid Colon	Sigmoid Colon
22	chr2:86071800-86096200	Weak transcription	Pancreatic Islets	Pancreatic Islet
23	chr2:86072000-86090400	Strong transcription	Cortex derived primary cultured neurospheres	brain
24	chr2:86072000-86096800	Weak transcription	Psoas Muscle	Psoas
25	chr2:86072200-86080000	Strong transcription	Primary monocytes fromperipheralblood	blood
26	chr2:86072800-86079400	Weak transcription	Primary hematopoietic stem cells	blood
27	chr2:86073000-86083600	Weak transcription	HUES6 Cell Line	embryonic stem cell
28	chr2:86074000-86089800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr2:86074600-86080000	Weak transcription	HSMMtube	muscle
30	chr2:86074600-86080800	Weak transcription	Duodenum Smooth Muscle	Duodenum
31	chr2:86074600-86089600	Weak transcription	NH-A	brain
32	chr2:86074800-86086200	Weak transcription	HSMM	muscle
33	chr2:86075200-86082400	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
34	chr2:86075400-86080000	Weak transcription	Pancreas	Pancrea
35	chr2:86075400-86114000	Weak transcription	Aorta	Aorta
36	chr2:86076000-86090400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
37	chr2:86076800-86081000	Strong transcription	Liver	Liver
38	chr2:86076800-86081400	Weak transcription	Right Atrium	heart
39	chr2:86077200-86079600	Genic enhancers	Primary B cells from peripheral blood	blood
40	chr2:86077200-86088600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
41	chr2:86077400-86079600	Strong transcription	Osteobl	bone
42	chr2:86077400-86079800	Genic enhancers	Primary mononuclear cells fromperipheralblood	Blood
43	chr2:86077400-86080000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
44	chr2:86077600-86079600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
45	chr2:86077600-86079600	Strong transcription	Brain Germinal Matrix	brain
46	chr2:86077600-86080200	Genic enhancers	Fetal Thymus	thymus
47	chr2:86077600-86082400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
48	chr2:86077800-86079400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
49	chr2:86078200-86080000	Genic enhancers	Brain Hippocampus Middle	brain
50	chr2:86078200-86080200	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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