Variant report

Variant	rs4832215
Chromosome Location	chr2:86112873-86112874
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr2:86110110..86112951-chr2:86114796..86117966,4	MCF-7	breast:
2	chr2:86110287..86113601-chr2:86124119..86126879,3	K562	blood:
3	chr2:86112427..86114541-chr8:128877788..128879604,2	MCF-7	breast:
4	chr2:86101410..86103252-chr2:86110793..86113743,3	K562	blood:
5	chr2:86095415..86096944-chr2:86111486..86113400,2	MCF-7	breast:
6	chr2:86096615..86099276-chr2:86111302..86113813,2	MCF-7	breast:
7	chr2:86112022..86114027-chr2:86114366..86116766,2	MCF-7	breast:
8	chr2:86112101..86114147-chr2:86124119..86126980,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000232504	Chromatin interaction
ENSG00000115525	Chromatin interaction

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10175609	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10203518	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11687628	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12478916	0.80[EUR][1000 genomes]
rs12613609	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12714154	0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs12994053	0.89[ASN][1000 genomes]
rs13024999	0.85[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs13025142	0.96[EUR][1000 genomes]
rs13422640	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1401383	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs1401385	0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs1533605	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2010859	0.83[ASN][1000 genomes]
rs2083170	0.80[ASN][1000 genomes]
rs2176627	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2366947	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2366950	0.81[ASN][1000 genomes]
rs28364795	0.85[ASN][1000 genomes]
rs4313976	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs4331504	0.80[ASN][1000 genomes]
rs4553826	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4832015	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4832213	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4832219	0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs4832220	0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs4832221	0.88[ASN][1000 genomes]
rs6547634	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6547637	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6707472	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6721125	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6726662	0.86[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs6734488	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6753350	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7565996	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs893445	0.80[ASN][1000 genomes]

No data

Chromatin state (count:91 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:86075400-86114000	Weak transcription	Aorta	Aorta
2	chr2:86086800-86113000	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr2:86093800-86113000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr2:86102800-86115200	Weak transcription	Small Intestine	intestine
5	chr2:86104800-86113400	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr2:86106400-86113800	Weak transcription	Pancreas	Pancrea
7	chr2:86106400-86113800	Weak transcription	Right Atrium	heart
8	chr2:86106400-86115200	Weak transcription	Gastric	stomach
9	chr2:86106600-86113200	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr2:86107000-86113400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr2:86107400-86113000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
12	chr2:86107800-86113600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
13	chr2:86109600-86113200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
14	chr2:86109600-86113200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr2:86109600-86113400	Weak transcription	Cortex derived primary cultured neurospheres	brain
16	chr2:86109600-86113800	Weak transcription	Fetal Stomach	stomach
17	chr2:86109800-86113000	Weak transcription	NHEK	skin
18	chr2:86110000-86113000	Enhancers	Brain Anterior Caudate	brain
19	chr2:86110800-86113200	Enhancers	Brain Inferior Temporal Lobe	brain
20	chr2:86111000-86113800	Enhancers	Brain Substantia Nigra	brain
21	chr2:86111000-86114000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
22	chr2:86111000-86114000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
23	chr2:86111000-86114600	Enhancers	Primary B cells from peripheral blood	blood
24	chr2:86111200-86113000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr2:86111200-86113000	Enhancers	Brain Hippocampus Middle	brain
26	chr2:86111200-86113200	Weak transcription	Psoas Muscle	Psoas
27	chr2:86111200-86113800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
28	chr2:86111200-86113800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
29	chr2:86111400-86113000	Enhancers	Primary T cells from cord blood	blood
30	chr2:86111400-86113000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr2:86111400-86113800	Weak transcription	Brain Germinal Matrix	brain
32	chr2:86111400-86114000	Enhancers	Primary T helper naive cells from peripheral blood	blood
33	chr2:86111600-86113400	Enhancers	Primary T helper cells PMA-I stimulated	--
34	chr2:86111600-86113600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr2:86111600-86113800	Enhancers	Brain Angular Gyrus	brain
36	chr2:86111600-86113800	Enhancers	Skeletal Muscle Female	skeletal muscle
37	chr2:86111600-86114000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
38	chr2:86111600-86114000	Enhancers	NHDF-Ad	bronchial
39	chr2:86111600-86114200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
40	chr2:86111800-86113200	Enhancers	Duodenum Mucosa	Duodenum
41	chr2:86111800-86113600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
42	chr2:86111800-86113800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
43	chr2:86111800-86113800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
44	chr2:86111800-86113800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
45	chr2:86111800-86113800	Enhancers	Fetal Muscle Leg	muscle
46	chr2:86111800-86114000	Enhancers	Primary hematopoietic stem cells short term culture	blood
47	chr2:86111800-86114000	Enhancers	Primary T helper cells fromperipheralblood	blood
48	chr2:86111800-86114000	Enhancers	K562	blood
49	chr2:86111800-86114000	Enhancers	Osteobl	bone
50	chr2:86112000-86113000	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin

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