Variant report

Variant	rs4313976
Chromosome Location	chr2:86119187-86119188
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr2:86118029-86121960	K562	blood:	n/a	n/a

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ATOH8-2	chr2:86118821-86119375	XLOC_001558
2	lnc-ATOH8-2	chr2:86118821-86119368	XLOC_001558
3	lnc-ATOH8-2	chr2:86118629-86119389	NONHSAT072065

Variant related genes	Relation type
ST3GAL5	TF binding region

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs12714154	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12994053	0.85[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs13024999	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1401383	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1401385	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2010859	0.86[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs2083170	0.86[ASN][1000 genomes]
rs2366950	0.86[ASN][1000 genomes]
rs28364795	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4331504	0.86[ASN][1000 genomes]
rs4832215	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs4832219	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4832220	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4832221	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6707472	0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs6726662	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7565996	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs893445	0.86[ASN][1000 genomes]

No data

Chromatin state (count:74 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:86116800-86120800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr2:86117200-86120000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
3	chr2:86117400-86119400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr2:86117400-86119600	Weak transcription	HSMM	muscle
5	chr2:86117400-86119800	Weak transcription	Ovary	ovary
6	chr2:86117400-86120600	Weak transcription	HUVEC	blood vessel
7	chr2:86117400-86120600	Weak transcription	NHLF	lung
8	chr2:86117400-86126400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
9	chr2:86117600-86120200	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr2:86117800-86119600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr2:86117800-86119800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr2:86117800-86120600	Weak transcription	HSMMtube	muscle
13	chr2:86118000-86119400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr2:86118000-86119400	Weak transcription	Duodenum Smooth Muscle	Duodenum
15	chr2:86118000-86119400	Weak transcription	Sigmoid Colon	Sigmoid Colon
16	chr2:86118000-86119800	Weak transcription	Left Ventricle	heart
17	chr2:86118000-86119800	Weak transcription	Lung	lung
18	chr2:86118000-86119800	Weak transcription	Osteobl	bone
19	chr2:86118000-86120200	Enhancers	Primary monocytes fromperipheralblood	blood
20	chr2:86118000-86120400	Weak transcription	NH-A	brain
21	chr2:86118000-86120600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr2:86118000-86120800	Weak transcription	Right Atrium	heart
23	chr2:86118000-86120800	Weak transcription	Right Ventricle	heart
24	chr2:86118000-86121600	Enhancers	Fetal Muscle Leg	muscle
25	chr2:86118200-86119400	Weak transcription	Primary hematopoietic stem cells	blood
26	chr2:86118200-86119400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
27	chr2:86118200-86119400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr2:86118200-86119400	Weak transcription	Fetal Lung	lung
29	chr2:86118200-86119400	Weak transcription	Dnd41	blood
30	chr2:86118200-86119400	Weak transcription	HMEC	breast
31	chr2:86118200-86119600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
32	chr2:86118200-86119600	Weak transcription	Primary T helper cells PMA-I stimulated	--
33	chr2:86118200-86119600	Weak transcription	NHDF-Ad	bronchial
34	chr2:86118200-86119800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
35	chr2:86118200-86120400	Enhancers	Brain Anterior Caudate	brain
36	chr2:86118200-86120600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
37	chr2:86118200-86120600	Weak transcription	Skeletal Muscle Female	skeletal muscle
38	chr2:86118200-86120800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
39	chr2:86118200-86120800	Weak transcription	Spleen	Spleen
40	chr2:86118200-86121000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
41	chr2:86118200-86122200	Weak transcription	Primary B cells from cord blood	blood
42	chr2:86118200-86126000	Weak transcription	Primary T cells from cord blood	blood
43	chr2:86118200-86126800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
44	chr2:86118400-86119400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
45	chr2:86118400-86119400	Weak transcription	Primary B cells from peripheral blood	blood
46	chr2:86118400-86119400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
47	chr2:86118400-86119400	Weak transcription	Brain Inferior Temporal Lobe	brain
48	chr2:86118400-86119400	Weak transcription	Fetal Thymus	thymus
49	chr2:86118400-86119400	Weak transcription	A549	lung
50	chr2:86118400-86119400	Weak transcription	NHEK	skin

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