Variant report

Variant	rs893445
Chromosome Location	chr2:86138238-86138239
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:86137885..86140851-chr2:86180033..86182072,2	MCF-7	breast:
2	chr2:86131881..86134262-chr2:86138041..86140281,2	K562	blood:

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs10181978	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10185207	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10185280	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10192998	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10193207	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1025704	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1025705	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1025706	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1025707	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1025708	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11682312	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11693421	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11693423	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11693435	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12616165	0.84[AMR][1000 genomes]
rs12714154	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12714157	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12714158	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12994053	0.91[ASN][1000 genomes]
rs13024999	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13401298	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13422697	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1401383	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1401385	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1438156	0.86[AMR][1000 genomes]
rs17026750	0.88[AMR][1000 genomes]
rs17026756	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1866244	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2008559	0.85[AMR][1000 genomes]
rs2010859	0.85[ASN][1000 genomes]
rs2083170	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2164878	0.85[AMR][1000 genomes]
rs2366950	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2577785	0.81[AMR][1000 genomes]
rs2679722	0.88[AMR][1000 genomes]
rs28364795	0.83[ASN][1000 genomes]
rs2945824	0.88[AMR][1000 genomes]
rs4313976	0.86[ASN][1000 genomes]
rs4331504	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4613279	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4832017	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4832215	0.80[ASN][1000 genomes]
rs4832219	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4832220	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4832221	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4832222	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4832226	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4832227	0.80[ASN][1000 genomes]
rs6547647	0.86[AMR][1000 genomes]
rs6718537	0.83[AMR][1000 genomes]
rs6726662	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6733593	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs71411844	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7565996	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7576135	0.84[AMR][1000 genomes]
rs7586560	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs893447	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs893448	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs893449	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9309626	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9309627	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs934828	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]

No data

Chromatin state (count:57 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:86128600-86141200	Weak transcription	Primary T cells from cord blood	blood
2	chr2:86129800-86141400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr2:86131400-86142400	Weak transcription	Esophagus	oesophagus
4	chr2:86131800-86141600	Weak transcription	Primary B cells from peripheral blood	blood
5	chr2:86133200-86139200	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr2:86133200-86142800	Weak transcription	Colon Smooth Muscle	Colon
7	chr2:86133200-86149200	Weak transcription	Stomach Smooth Muscle	stomach
8	chr2:86133200-86152000	Weak transcription	Skeletal Muscle Female	skeletal muscle
9	chr2:86133800-86139000	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr2:86134400-86148000	Weak transcription	Thymus	Thymus
11	chr2:86135200-86139600	Weak transcription	Stomach Mucosa	stomach
12	chr2:86135400-86138400	Weak transcription	Osteobl	bone
13	chr2:86135400-86138800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr2:86135400-86143800	Weak transcription	Spleen	Spleen
15	chr2:86135400-86148000	Weak transcription	Pancreas	Pancrea
16	chr2:86135400-86151600	Weak transcription	Fetal Muscle Trunk	muscle
17	chr2:86135400-86151600	Weak transcription	Lung	lung
18	chr2:86135400-86152600	Weak transcription	Psoas Muscle	Psoas
19	chr2:86135600-86138400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr2:86135600-86139000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
21	chr2:86135800-86138400	Weak transcription	K562	blood
22	chr2:86135800-86138800	Weak transcription	Muscle Satellite Cultured Cells	--
23	chr2:86136200-86139000	Weak transcription	NH-A	brain
24	chr2:86136200-86139200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
25	chr2:86137000-86139200	Weak transcription	Brain Angular Gyrus	brain
26	chr2:86137400-86138600	Enhancers	Liver	Liver
27	chr2:86137400-86138600	Enhancers	Ovary	ovary
28	chr2:86137400-86139800	Enhancers	Adipose Nuclei	Adipose
29	chr2:86137400-86143600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr2:86137600-86139200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr2:86137600-86139800	Enhancers	Brain Inferior Temporal Lobe	brain
32	chr2:86137800-86138400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
33	chr2:86137800-86139200	Enhancers	Primary hematopoietic stem cells short term culture	blood
34	chr2:86137800-86139200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
35	chr2:86137800-86139200	Enhancers	NHEK	skin
36	chr2:86137800-86139600	Enhancers	Brain Substantia Nigra	brain
37	chr2:86137800-86139800	Enhancers	Brain Cingulate Gyrus	brain
38	chr2:86137800-86139800	Enhancers	Brain Hippocampus Middle	brain
39	chr2:86137800-86139800	Enhancers	A549	lung
40	chr2:86137800-86139800	Enhancers	HSMM	muscle
41	chr2:86137800-86140400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
42	chr2:86137800-86141600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr2:86137800-86141600	Enhancers	HMEC	breast
44	chr2:86137800-86141600	Enhancers	NHDF-Ad	bronchial
45	chr2:86138000-86138400	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
46	chr2:86138000-86138600	Enhancers	Fetal Thymus	thymus
47	chr2:86138000-86139800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
48	chr2:86138000-86139800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
49	chr2:86138000-86139800	Enhancers	Brain Anterior Caudate	brain
50	chr2:86138000-86139800	Enhancers	HSMMtube	muscle

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