Variant report

Variant	rs6726662
Chromosome Location	chr2:86121938-86121939
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:86114878..86116961-chr2:86120705..86124277,3	MCF-7	breast:
2	chr2:86115047..86116757-chr2:86119715..86122326,2	MCF-7	breast:
3	chr2:86119817..86123713-chr2:86130856..86134451,3	K562	blood:

Variant related genes	Relation type
ENSG00000115525	Chromatin interaction
ENSG00000232504	Chromatin interaction
ENSG00000272564	Chromatin interaction

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs12478916	0.81[CEU][hapmap]
rs12613609	0.85[CEU][hapmap]
rs12714154	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12994053	0.93[AFR][1000 genomes];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13024999	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13025142	0.88[CEU][hapmap]
rs13028295	0.81[JPT][hapmap]
rs13422640	0.85[CEU][hapmap]
rs1401383	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1401385	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1533605	0.88[CEU][hapmap];0.81[JPT][hapmap]
rs2010859	0.88[AFR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2083170	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2176627	0.85[CEU][hapmap]
rs2366947	0.88[CEU][hapmap]
rs2366950	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs28364795	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4313976	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4331504	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4553826	0.88[CEU][hapmap]
rs4832015	0.88[CEU][hapmap]
rs4832213	0.85[CEU][hapmap];0.89[YRI][hapmap];0.88[AFR][1000 genomes]
rs4832215	0.86[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs4832219	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4832220	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4832221	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6547637	0.85[CEU][hapmap]
rs6707472	0.92[AFR][1000 genomes];0.86[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs6721125	0.88[CEU][hapmap]
rs6734488	0.85[CEU][hapmap]
rs6753350	0.85[CEU][hapmap]
rs7565996	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs893445	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:86117400-86126400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
2	chr2:86118200-86122200	Weak transcription	Primary B cells from cord blood	blood
3	chr2:86118200-86126000	Weak transcription	Primary T cells from cord blood	blood
4	chr2:86118200-86126800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
5	chr2:86118400-86126600	Weak transcription	Primary T helper cells fromperipheralblood	blood
6	chr2:86118400-86127600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
7	chr2:86118600-86131000	Weak transcription	Thymus	Thymus
8	chr2:86118800-86122400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr2:86119200-86122000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr2:86119400-86122000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr2:86119400-86122200	Enhancers	HMEC	breast
12	chr2:86119600-86122000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr2:86119600-86122000	Flanking Active TSS	A549	lung
14	chr2:86119800-86122000	Enhancers	Osteobl	bone
15	chr2:86119800-86132200	Weak transcription	Duodenum Smooth Muscle	Duodenum
16	chr2:86120000-86126600	Weak transcription	Primary T helper cells PMA-I stimulated	--
17	chr2:86120200-86122000	Enhancers	NHDF-Ad	bronchial
18	chr2:86120200-86134200	Weak transcription	Monocytes-CD14+_RO01746	blood
19	chr2:86120800-86131400	Weak transcription	Pancreas	Pancrea
20	chr2:86121000-86122000	Enhancers	Brain Anterior Caudate	brain
21	chr2:86121000-86122600	Enhancers	NHEK	skin
22	chr2:86121200-86123800	Weak transcription	Lung	lung
23	chr2:86121200-86126600	Weak transcription	Primary T cells fromperipheralblood	blood
24	chr2:86121400-86122200	Enhancers	Muscle Satellite Cultured Cells	--
25	chr2:86121400-86124000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
26	chr2:86121400-86127000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
27	chr2:86121400-86128800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr2:86121400-86132000	Weak transcription	Placenta	Placenta
29	chr2:86121600-86122000	Enhancers	NH-A	brain
30	chr2:86121600-86122200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
31	chr2:86121600-86122600	Weak transcription	Brain Inferior Temporal Lobe	brain
32	chr2:86121600-86122800	Weak transcription	Brain Hippocampus Middle	brain
33	chr2:86121600-86125800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
34	chr2:86121600-86126800	Weak transcription	Brain Angular Gyrus	brain
35	chr2:86121600-86129000	Weak transcription	Fetal Muscle Leg	muscle
36	chr2:86121600-86129400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr2:86121600-86131800	Weak transcription	Adipose Nuclei	Adipose
38	chr2:86121800-86122600	Weak transcription	Brain Cingulate Gyrus	brain
39	chr2:86121800-86123200	Enhancers	Brain Substantia Nigra	brain
40	chr2:86121800-86124000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
41	chr2:86121800-86127000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
42	chr2:86121800-86128800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links