Variant report

Variant	rs6707472
Chromosome Location	chr2:86112049-86112050
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr2:86110110..86112951-chr2:86114796..86117966,4	MCF-7	breast:
2	chr2:86110287..86113601-chr2:86124119..86126879,3	K562	blood:
3	chr2:86101410..86103252-chr2:86110793..86113743,3	K562	blood:
4	chr2:86095415..86096944-chr2:86111486..86113400,2	MCF-7	breast:
5	chr2:86096615..86099276-chr2:86111302..86113813,2	MCF-7	breast:
6	chr2:86112022..86114027-chr2:86114366..86116766,2	MCF-7	breast:
7	chr2:86110403..86112646-chr2:86114829..86116563,3	K562	blood:
8	chr2:86110275..86112435-chr2:86115823..86118028,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000115525	Chromatin interaction
ENSG00000232504	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10175609	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10203518	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11681961	0.80[ASN][1000 genomes]
rs11687628	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12478916	0.80[EUR][1000 genomes]
rs12613609	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12714154	0.81[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs12994053	0.85[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs13024999	0.95[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs13025142	0.96[EUR][1000 genomes]
rs13422640	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1401383	0.88[AFR][1000 genomes];0.86[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs1401385	0.82[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs1533605	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2010859	0.81[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs2030275	0.80[ASN][1000 genomes]
rs2176627	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2366947	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs28364795	0.82[ASN][1000 genomes]
rs4313976	0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs4553826	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4832015	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4832213	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4832215	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4832219	0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs4832220	0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs4832221	0.85[ASN][1000 genomes]
rs6547634	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6547637	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6721125	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6726662	0.92[AFR][1000 genomes];0.86[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs6734488	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6753350	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7565996	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[ASN][1000 genomes]

No data

Chromatin state (count:88 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:86075400-86114000	Weak transcription	Aorta	Aorta
2	chr2:86081000-86112400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr2:86086800-86113000	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr2:86093400-86112400	Weak transcription	Colonic Mucosa	Colon
5	chr2:86093800-86113000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr2:86102800-86115200	Weak transcription	Small Intestine	intestine
7	chr2:86104200-86112400	Weak transcription	Monocytes-CD14+_RO01746	blood
8	chr2:86104800-86113400	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr2:86105400-86112400	Weak transcription	Ovary	ovary
10	chr2:86106200-86112200	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr2:86106200-86112200	Weak transcription	Liver	Liver
12	chr2:86106400-86112200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr2:86106400-86112400	Weak transcription	Rectal Mucosa Donor 31	rectum
14	chr2:86106400-86112400	Weak transcription	NH-A	brain
15	chr2:86106400-86113800	Weak transcription	Pancreas	Pancrea
16	chr2:86106400-86113800	Weak transcription	Right Atrium	heart
17	chr2:86106400-86115200	Weak transcription	Gastric	stomach
18	chr2:86106600-86113200	Weak transcription	Sigmoid Colon	Sigmoid Colon
19	chr2:86106800-86112400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
20	chr2:86106800-86112400	Weak transcription	Spleen	Spleen
21	chr2:86107000-86113400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr2:86107200-86112400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
23	chr2:86107400-86112400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
24	chr2:86107400-86113000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
25	chr2:86107600-86112400	Weak transcription	Duodenum Smooth Muscle	Duodenum
26	chr2:86107800-86113600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
27	chr2:86108200-86112400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
28	chr2:86108800-86112200	Weak transcription	Primary T cells fromperipheralblood	blood
29	chr2:86109600-86113200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
30	chr2:86109600-86113200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
31	chr2:86109600-86113400	Weak transcription	Cortex derived primary cultured neurospheres	brain
32	chr2:86109600-86113800	Weak transcription	Fetal Stomach	stomach
33	chr2:86109800-86112400	Weak transcription	HMEC	breast
34	chr2:86109800-86113000	Weak transcription	NHEK	skin
35	chr2:86110000-86113000	Enhancers	Brain Anterior Caudate	brain
36	chr2:86110200-86112200	Weak transcription	A549	lung
37	chr2:86110800-86113200	Enhancers	Brain Inferior Temporal Lobe	brain
38	chr2:86111000-86112400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
39	chr2:86111000-86113800	Enhancers	Brain Substantia Nigra	brain
40	chr2:86111000-86114000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
41	chr2:86111000-86114000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
42	chr2:86111000-86114600	Enhancers	Primary B cells from peripheral blood	blood
43	chr2:86111200-86112200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
44	chr2:86111200-86112200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
45	chr2:86111200-86112200	Weak transcription	Thymus	Thymus
46	chr2:86111200-86112400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
47	chr2:86111200-86112400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
48	chr2:86111200-86112400	Weak transcription	Fetal Muscle Trunk	muscle
49	chr2:86111200-86112400	Weak transcription	Lung	lung
50	chr2:86111200-86113000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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