Variant report

Variant	rs12714158
Chromosome Location	chr2:86150631-86150632
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:86149476..86151149-chr2:86152541..86154219,2	MCF-7	breast:
2	chr2:86146663..86150858-chr2:86151745..86155490,4	K562	blood:
3	chr2:86147713..86150880-chr2:86153499..86156772,3	K562	blood:

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10181978	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10185207	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10185280	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10192998	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10193207	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1025704	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1025705	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1025706	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1025707	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1025708	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11682312	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11693421	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11693423	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11693435	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12616165	0.90[AMR][1000 genomes]
rs12714157	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13401298	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1438156	0.92[AMR][1000 genomes]
rs17026750	0.84[AMR][1000 genomes]
rs17026756	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1866244	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2008559	0.93[AMR][1000 genomes]
rs2083170	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2164878	0.93[AMR][1000 genomes]
rs2366950	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2679722	0.82[AMR][1000 genomes]
rs2945824	0.82[AMR][1000 genomes]
rs4331504	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4613279	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4832017	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4832222	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4832226	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4832227	0.93[ASN][1000 genomes]
rs6547647	0.92[AMR][1000 genomes]
rs6718537	0.91[AMR][1000 genomes]
rs6733593	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs71411844	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7576135	0.90[AMR][1000 genomes]
rs7586560	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs893445	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs893447	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs893448	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs893449	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9309626	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9309627	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs934828	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:86133200-86152000	Weak transcription	Skeletal Muscle Female	skeletal muscle
2	chr2:86135400-86151600	Weak transcription	Fetal Muscle Trunk	muscle
3	chr2:86135400-86151600	Weak transcription	Lung	lung
4	chr2:86135400-86152600	Weak transcription	Psoas Muscle	Psoas
5	chr2:86138200-86151600	Weak transcription	Fetal Muscle Leg	muscle
6	chr2:86142200-86155800	Weak transcription	Primary T cells from cord blood	blood
7	chr2:86142400-86151800	Weak transcription	Primary B cells from peripheral blood	blood
8	chr2:86142400-86157800	Weak transcription	Aorta	Aorta
9	chr2:86142600-86151000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr2:86142600-86151600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr2:86143200-86150800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr2:86145600-86151000	Weak transcription	HMEC	breast
13	chr2:86147200-86155000	Enhancers	Brain Hippocampus Middle	brain
14	chr2:86148400-86152000	Weak transcription	NHDF-Ad	bronchial
15	chr2:86148600-86151600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr2:86148600-86156200	Weak transcription	NH-A	brain
17	chr2:86148800-86151000	Weak transcription	Adipose Nuclei	Adipose
18	chr2:86148800-86151400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr2:86148800-86151600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr2:86148800-86151600	Weak transcription	HSMM	muscle
21	chr2:86148800-86151600	Weak transcription	Osteobl	bone
22	chr2:86149000-86151600	Weak transcription	Ovary	ovary
23	chr2:86149000-86152000	Weak transcription	Colon Smooth Muscle	Colon
24	chr2:86149200-86152000	Weak transcription	Rectal Smooth Muscle	rectum
25	chr2:86149200-86152800	Enhancers	Liver	Liver
26	chr2:86149400-86151600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr2:86149400-86151600	Weak transcription	Cortex derived primary cultured neurospheres	brain
28	chr2:86149400-86151800	Weak transcription	Duodenum Smooth Muscle	Duodenum
29	chr2:86149400-86152200	Weak transcription	Gastric	stomach
30	chr2:86149400-86152200	Weak transcription	Right Ventricle	heart
31	chr2:86149400-86157400	Weak transcription	Pancreas	Pancrea
32	chr2:86149600-86151000	Weak transcription	Brain Angular Gyrus	brain
33	chr2:86149600-86151000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
34	chr2:86149600-86151600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr2:86149600-86151600	Weak transcription	Thymus	Thymus
36	chr2:86149600-86151800	Weak transcription	Rectal Mucosa Donor 31	rectum
37	chr2:86149800-86150800	Weak transcription	Brain Cingulate Gyrus	brain
38	chr2:86149800-86151600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
39	chr2:86149800-86151600	Weak transcription	Brain Anterior Caudate	brain
40	chr2:86149800-86151600	Weak transcription	Stomach Mucosa	stomach
41	chr2:86149800-86151800	Weak transcription	K562	blood
42	chr2:86149800-86152000	Weak transcription	Left Ventricle	heart
43	chr2:86149800-86157200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
44	chr2:86149800-86157400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
45	chr2:86150000-86152000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
46	chr2:86150200-86151600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
47	chr2:86150400-86150800	Weak transcription	Fetal Thymus	thymus
48	chr2:86150400-86152000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
49	chr2:86150400-86152800	Enhancers	Hela-S3	cervix
50	chr2:86150400-86155000	Enhancers	Brain Substantia Nigra	brain

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