Variant report

Variant	rs10193207
Chromosome Location	chr2:86148796-86148797
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:86114472..86116117-chr2:86147014..86149463,2	K562	blood:
2	chr2:86140957..86144673-chr2:86146213..86150354,4	K562	blood:
3	chr2:86146663..86150858-chr2:86151745..86155490,4	K562	blood:
4	chr2:86147713..86150880-chr2:86153499..86156772,3	K562	blood:
5	chr2:86140957..86144482-chr2:86147122..86150354,4	K562	blood:

Variant related genes	Relation type
ENSG00000115525	Chromatin interaction

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10181978	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10185207	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10185280	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10192998	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1025704	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1025705	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1025706	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1025707	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1025708	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11682312	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11693421	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11693423	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11693435	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12616165	0.90[AMR][1000 genomes]
rs12714157	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12714158	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13401298	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1438156	0.92[AMR][1000 genomes]
rs17026750	0.84[AMR][1000 genomes]
rs17026756	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1866244	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2008559	0.93[AMR][1000 genomes]
rs2083170	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2164878	0.93[AMR][1000 genomes]
rs2366950	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2679722	0.82[AMR][1000 genomes]
rs2945824	0.82[AMR][1000 genomes]
rs4331504	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4613279	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4832017	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4832222	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4832226	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4832227	0.93[ASN][1000 genomes]
rs6547647	0.92[AMR][1000 genomes]
rs6718537	0.91[AMR][1000 genomes]
rs6733593	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs71411844	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7576135	0.90[AMR][1000 genomes]
rs7586560	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs893445	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs893447	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs893448	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs893449	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9309626	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9309627	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs934828	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:86133200-86149200	Weak transcription	Stomach Smooth Muscle	stomach
2	chr2:86133200-86152000	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr2:86135400-86151600	Weak transcription	Fetal Muscle Trunk	muscle
4	chr2:86135400-86151600	Weak transcription	Lung	lung
5	chr2:86135400-86152600	Weak transcription	Psoas Muscle	Psoas
6	chr2:86138200-86151600	Weak transcription	Fetal Muscle Leg	muscle
7	chr2:86142200-86155800	Weak transcription	Primary T cells from cord blood	blood
8	chr2:86142400-86151800	Weak transcription	Primary B cells from peripheral blood	blood
9	chr2:86142400-86157800	Weak transcription	Aorta	Aorta
10	chr2:86142600-86151000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr2:86142600-86151600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr2:86143200-86150800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr2:86145600-86151000	Weak transcription	HMEC	breast
14	chr2:86147200-86148800	Enhancers	Adipose Nuclei	Adipose
15	chr2:86147200-86155000	Enhancers	Brain Hippocampus Middle	brain
16	chr2:86147400-86150400	Enhancers	Fetal Thymus	thymus
17	chr2:86147800-86149800	Enhancers	Brain Anterior Caudate	brain
18	chr2:86147800-86150000	Enhancers	Brain Inferior Temporal Lobe	brain
19	chr2:86148000-86148800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr2:86148000-86149400	Enhancers	Pancreas	Pancrea
21	chr2:86148000-86149600	Enhancers	Thymus	Thymus
22	chr2:86148000-86149800	Enhancers	Brain Cingulate Gyrus	brain
23	chr2:86148000-86150000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr2:86148000-86150000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
25	chr2:86148000-86150000	Enhancers	Brain Substantia Nigra	brain
26	chr2:86148000-86150000	Enhancers	Hela-S3	cervix
27	chr2:86148000-86150200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr2:86148200-86148800	Enhancers	Primary hematopoietic stem cells	blood
29	chr2:86148200-86149000	Enhancers	Ovary	ovary
30	chr2:86148200-86149000	Bivalent Enhancer	HepG2	liver
31	chr2:86148200-86149200	Enhancers	Rectal Smooth Muscle	rectum
32	chr2:86148200-86149400	Enhancers	HUES6 Cell Line	embryonic stem cell
33	chr2:86148200-86149400	Enhancers	Cortex derived primary cultured neurospheres	brain
34	chr2:86148200-86149400	Enhancers	Gastric	stomach
35	chr2:86148200-86149600	Enhancers	Brain Angular Gyrus	brain
36	chr2:86148200-86149800	Enhancers	Stomach Mucosa	stomach
37	chr2:86148400-86148800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr2:86148400-86148800	Enhancers	Liver	Liver
39	chr2:86148400-86148800	Enhancers	Osteobl	bone
40	chr2:86148400-86149000	Enhancers	Colon Smooth Muscle	Colon
41	chr2:86148400-86149400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
42	chr2:86148400-86149600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
43	chr2:86148400-86149800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
44	chr2:86148400-86152000	Weak transcription	NHDF-Ad	bronchial
45	chr2:86148600-86148800	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
46	chr2:86148600-86148800	Enhancers	HSMM	muscle
47	chr2:86148600-86149200	Weak transcription	Right Ventricle	heart
48	chr2:86148600-86149200	Weak transcription	HSMMtube	muscle
49	chr2:86148600-86149400	Flanking Active TSS	K562	blood
50	chr2:86148600-86149600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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