Variant report

Variant	rs1025706
Chromosome Location	chr2:86152981-86152982
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:86151028..86153839-chr2:86202583..86205571,2	K562	blood:
2	chr2:86149476..86151149-chr2:86152541..86154219,2	MCF-7	breast:
3	chr2:86146663..86150858-chr2:86151745..86155490,4	K562	blood:

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10181978	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10185207	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10185280	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10192998	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10193207	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1025704	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1025705	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1025707	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1025708	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11682312	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11693421	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11693423	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11693435	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12616165	0.90[AMR][1000 genomes]
rs12714157	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12714158	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13401298	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1438156	0.92[AMR][1000 genomes]
rs17026750	0.84[AMR][1000 genomes]
rs17026756	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1866244	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2008559	0.93[AMR][1000 genomes]
rs2083170	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2164878	0.93[AMR][1000 genomes]
rs2366950	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2679722	0.82[AMR][1000 genomes]
rs2945824	0.82[AMR][1000 genomes]
rs4331504	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4613279	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4832017	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4832222	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4832226	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4832227	0.93[ASN][1000 genomes]
rs6547647	0.92[AMR][1000 genomes]
rs6718537	0.91[AMR][1000 genomes]
rs6733593	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs71411844	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7576135	0.90[AMR][1000 genomes]
rs7586560	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs893445	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs893447	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs893448	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs893449	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9309626	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9309627	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs934828	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:86142200-86155800	Weak transcription	Primary T cells from cord blood	blood
2	chr2:86142400-86157800	Weak transcription	Aorta	Aorta
3	chr2:86147200-86155000	Enhancers	Brain Hippocampus Middle	brain
4	chr2:86148600-86156200	Weak transcription	NH-A	brain
5	chr2:86149400-86157400	Weak transcription	Pancreas	Pancrea
6	chr2:86149800-86157200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr2:86149800-86157400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr2:86150400-86155000	Enhancers	Brain Substantia Nigra	brain
9	chr2:86150400-86155200	Enhancers	Brain Inferior Temporal Lobe	brain
10	chr2:86150400-86155200	Enhancers	A549	lung
11	chr2:86150800-86153200	Enhancers	Fetal Thymus	thymus
12	chr2:86150800-86155000	Enhancers	Brain Cingulate Gyrus	brain
13	chr2:86151000-86153400	Enhancers	Adipose Nuclei	Adipose
14	chr2:86151000-86154800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr2:86151000-86155000	Enhancers	Brain Angular Gyrus	brain
16	chr2:86151600-86153000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr2:86151600-86153000	Enhancers	Ovary	ovary
18	chr2:86151600-86153200	Enhancers	Fetal Muscle Leg	muscle
19	chr2:86151600-86153200	Enhancers	Lung	lung
20	chr2:86151600-86153200	Enhancers	Stomach Mucosa	stomach
21	chr2:86151600-86155000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr2:86151600-86155200	Enhancers	Brain Anterior Caudate	brain
23	chr2:86151600-86156400	Enhancers	Placenta	Placenta
24	chr2:86151800-86154000	Enhancers	Skeletal Muscle Male	skeletal muscle
25	chr2:86151800-86155200	Enhancers	Spleen	Spleen
26	chr2:86152000-86153000	Enhancers	Skeletal Muscle Female	skeletal muscle
27	chr2:86152000-86153200	Enhancers	Left Ventricle	heart
28	chr2:86152000-86153400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
29	chr2:86152000-86154400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr2:86152200-86153800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr2:86152200-86153800	Enhancers	Right Ventricle	heart
32	chr2:86152200-86154000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
33	chr2:86152200-86154800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
34	chr2:86152200-86163400	Weak transcription	Fetal Muscle Trunk	muscle
35	chr2:86152400-86153600	Weak transcription	NHEK	skin
36	chr2:86152400-86153800	Weak transcription	K562	blood
37	chr2:86152400-86154000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
38	chr2:86152400-86154800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr2:86152400-86155200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
40	chr2:86152400-86156200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
41	chr2:86152400-86163000	Weak transcription	Rectal Smooth Muscle	rectum
42	chr2:86152600-86153400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
43	chr2:86152600-86153600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
44	chr2:86152600-86154000	Weak transcription	Muscle Satellite Cultured Cells	--
45	chr2:86152600-86154000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
46	chr2:86152600-86154200	Weak transcription	HSMM	muscle
47	chr2:86152600-86154400	Weak transcription	Gastric	stomach
48	chr2:86152800-86153600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
49	chr2:86152800-86153800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
50	chr2:86152800-86153800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links