Variant report

Variant	rs9309627
Chromosome Location	chr2:86152055-86152056
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:86151028..86153839-chr2:86202583..86205571,2	K562	blood:
2	chr2:86146663..86150858-chr2:86151745..86155490,4	K562	blood:

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10181978	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10185207	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10185280	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10192998	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10193207	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1025704	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1025705	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1025706	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1025707	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1025708	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11682312	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11693421	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11693423	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11693435	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12616165	0.90[AMR][1000 genomes]
rs12714157	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12714158	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13401298	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1438156	0.92[AMR][1000 genomes]
rs17026750	0.84[AMR][1000 genomes]
rs17026756	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1866244	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2008559	0.93[AMR][1000 genomes]
rs2083170	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2164878	0.93[AMR][1000 genomes]
rs2366950	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2679722	0.82[AMR][1000 genomes]
rs2945824	0.82[AMR][1000 genomes]
rs4331504	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4613279	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4832017	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4832222	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4832226	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4832227	0.93[ASN][1000 genomes]
rs6547647	0.92[AMR][1000 genomes]
rs6718537	0.91[AMR][1000 genomes]
rs6733593	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs71411844	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7576135	0.90[AMR][1000 genomes]
rs7586560	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs893445	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs893447	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs893448	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs893449	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9309626	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs934828	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:71 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:86135400-86152600	Weak transcription	Psoas Muscle	Psoas
2	chr2:86142200-86155800	Weak transcription	Primary T cells from cord blood	blood
3	chr2:86142400-86157800	Weak transcription	Aorta	Aorta
4	chr2:86147200-86155000	Enhancers	Brain Hippocampus Middle	brain
5	chr2:86148600-86156200	Weak transcription	NH-A	brain
6	chr2:86149200-86152800	Enhancers	Liver	Liver
7	chr2:86149400-86152200	Weak transcription	Gastric	stomach
8	chr2:86149400-86152200	Weak transcription	Right Ventricle	heart
9	chr2:86149400-86157400	Weak transcription	Pancreas	Pancrea
10	chr2:86149800-86157200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr2:86149800-86157400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr2:86150400-86152800	Enhancers	Hela-S3	cervix
13	chr2:86150400-86155000	Enhancers	Brain Substantia Nigra	brain
14	chr2:86150400-86155200	Enhancers	Brain Inferior Temporal Lobe	brain
15	chr2:86150400-86155200	Enhancers	A549	lung
16	chr2:86150800-86152400	Enhancers	GM12878-XiMat	blood
17	chr2:86150800-86152800	Enhancers	Breast Myoepithelial Primary Cells	Breast
18	chr2:86150800-86153200	Enhancers	Fetal Thymus	thymus
19	chr2:86150800-86155000	Enhancers	Brain Cingulate Gyrus	brain
20	chr2:86151000-86152600	Enhancers	Muscle Satellite Cultured Cells	--
21	chr2:86151000-86152800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
22	chr2:86151000-86152800	Enhancers	Right Atrium	heart
23	chr2:86151000-86152800	Enhancers	HMEC	breast
24	chr2:86151000-86153400	Enhancers	Adipose Nuclei	Adipose
25	chr2:86151000-86154800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr2:86151000-86155000	Enhancers	Brain Angular Gyrus	brain
27	chr2:86151400-86152600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr2:86151400-86152800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr2:86151600-86152200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
30	chr2:86151600-86152200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr2:86151600-86152200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr2:86151600-86152200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
33	chr2:86151600-86152200	Enhancers	Duodenum Mucosa	Duodenum
34	chr2:86151600-86152200	Enhancers	Fetal Muscle Trunk	muscle
35	chr2:86151600-86152200	Enhancers	Osteobl	bone
36	chr2:86151600-86152400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
37	chr2:86151600-86152400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
38	chr2:86151600-86152400	Enhancers	NHEK	skin
39	chr2:86151600-86152600	Enhancers	Cortex derived primary cultured neurospheres	brain
40	chr2:86151600-86152600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
41	chr2:86151600-86152600	Enhancers	HSMM	muscle
42	chr2:86151600-86152800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
43	chr2:86151600-86152800	Enhancers	Thymus	Thymus
44	chr2:86151600-86153000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
45	chr2:86151600-86153000	Enhancers	Ovary	ovary
46	chr2:86151600-86153200	Enhancers	Fetal Muscle Leg	muscle
47	chr2:86151600-86153200	Enhancers	Lung	lung
48	chr2:86151600-86153200	Enhancers	Stomach Mucosa	stomach
49	chr2:86151600-86155000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
50	chr2:86151600-86155200	Enhancers	Brain Anterior Caudate	brain

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