Variant report

Variant	rs10210890
Chromosome Location	chr2:190059649-190059650
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:190058157..190060811-chr2:190064432..190067391,2	MCF-7	breast:

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10190073	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10211173	1.00[AMR][1000 genomes]
rs10931399	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12693529	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13014478	0.95[AFR][1000 genomes]
rs1399990	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1515863	1.00[AMR][1000 genomes]
rs1519180	1.00[AMR][1000 genomes]
rs1818585	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2037170	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2037171	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34556340	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34606082	1.00[AMR][1000 genomes]
rs3914569	1.00[AMR][1000 genomes]
rs57449412	1.00[AMR][1000 genomes]
rs57484527	1.00[AMR][1000 genomes]
rs58082189	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58148508	1.00[AMR][1000 genomes]
rs58624621	1.00[AMR][1000 genomes]
rs59784139	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61325916	1.00[AMR][1000 genomes]
rs61621835	1.00[AMR][1000 genomes]
rs6434329	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6434331	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6434332	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6434333	1.00[AMR][1000 genomes]
rs6434336	1.00[AMR][1000 genomes]
rs6706066	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73978807	1.00[AMR][1000 genomes]
rs73978813	1.00[AMR][1000 genomes]
rs73978814	1.00[AMR][1000 genomes]
rs73978816	1.00[AMR][1000 genomes]
rs73978826	1.00[AMR][1000 genomes]
rs73978829	1.00[AMR][1000 genomes]
rs73981483	1.00[AMR][1000 genomes]
rs7578627	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7594988	1.00[AMR][1000 genomes]
rs7606163	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs939156	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533029	chr2:189812229-190554339	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv875613	chr2:189999011-190324685	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:190056800-190069400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr2:190057200-190068200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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