Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:190182192..190183759-chr2:190192942..190195754,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10190073	1.00[AMR][1000 genomes]
rs10210890	1.00[AMR][1000 genomes]
rs10211173	1.00[AMR][1000 genomes]
rs10931399	1.00[AMR][1000 genomes]
rs12693529	1.00[AMR][1000 genomes]
rs1399990	1.00[AMR][1000 genomes]
rs1515863	1.00[AMR][1000 genomes]
rs1519180	1.00[AMR][1000 genomes]
rs1818585	0.90[LWK][hapmap];1.00[MEX][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs2037170	1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[AMR][1000 genomes]
rs2037171	1.00[LWK][hapmap];1.00[AMR][1000 genomes]
rs34556340	1.00[AMR][1000 genomes]
rs34606082	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3914569	1.00[AMR][1000 genomes]
rs57449412	1.00[AMR][1000 genomes]
rs57484527	1.00[AMR][1000 genomes]
rs58082189	1.00[AMR][1000 genomes]
rs58148508	1.00[AMR][1000 genomes]
rs58624621	1.00[AMR][1000 genomes]
rs59784139	1.00[AMR][1000 genomes]
rs6434329	1.00[AMR][1000 genomes]
rs6434331	1.00[AMR][1000 genomes]
rs6434332	1.00[AMR][1000 genomes]
rs6434333	1.00[AMR][1000 genomes]
rs6434336	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6706066	1.00[AMR][1000 genomes]
rs7578627	1.00[AMR][1000 genomes]
rs7594988	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7606163	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533029	chr2:189812229-190554339	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv875613	chr2:189999011-190324685	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
3	nsv875614	chr2:190110841-190254758	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:190178600-190183400	Weak transcription	Fetal Thymus	thymus

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