Variant report

Variant	rs1519180
Chromosome Location	chr2:190090606-190090607
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10190073	1.00[AMR][1000 genomes]
rs10210890	1.00[AMR][1000 genomes]
rs10211173	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10931399	1.00[AMR][1000 genomes]
rs12693529	1.00[AMR][1000 genomes]
rs1399990	1.00[AMR][1000 genomes]
rs1515863	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1818585	1.00[AMR][1000 genomes]
rs2037170	1.00[AMR][1000 genomes]
rs2037171	1.00[AMR][1000 genomes]
rs34556340	1.00[AMR][1000 genomes]
rs34606082	1.00[AMR][1000 genomes]
rs3914569	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57449412	1.00[AMR][1000 genomes]
rs57484527	1.00[AMR][1000 genomes]
rs58082189	1.00[AMR][1000 genomes]
rs58148508	1.00[AMR][1000 genomes]
rs58624621	1.00[AMR][1000 genomes]
rs59784139	1.00[AMR][1000 genomes]
rs61325916	1.00[AMR][1000 genomes]
rs61621835	1.00[AMR][1000 genomes]
rs6434329	1.00[AMR][1000 genomes]
rs6434331	1.00[AMR][1000 genomes]
rs6434332	1.00[AMR][1000 genomes]
rs6434333	1.00[AMR][1000 genomes]
rs6434336	1.00[AMR][1000 genomes]
rs6706066	1.00[AMR][1000 genomes]
rs73978807	1.00[AMR][1000 genomes]
rs73978813	1.00[AMR][1000 genomes]
rs73978814	1.00[AMR][1000 genomes]
rs73978816	1.00[AMR][1000 genomes]
rs73978826	1.00[AMR][1000 genomes]
rs73978829	1.00[AMR][1000 genomes]
rs73981483	1.00[AMR][1000 genomes]
rs7578627	1.00[AMR][1000 genomes]
rs7594988	1.00[AMR][1000 genomes]
rs7606163	1.00[AMR][1000 genomes]
rs939156	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533029	chr2:189812229-190554339	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv875613	chr2:189999011-190324685	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:190076000-190096800	Weak transcription	Aorta	Aorta
2	chr2:190087400-190090800	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr2:190087600-190099800	Weak transcription	HSMM	muscle
4	chr2:190088400-190097800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr2:190088600-190095800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr2:190089600-190091600	Flanking Active TSS	A549	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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