Variant report

Variant	rs10215206
Chromosome Location	chr7:108117088-108117089
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:108089080..108090844-chr7:108114077..108117502,3	K562	blood:
2	chr7:108116534..108119287-chr7:108165768..108167593,2	K562	blood:

Variant related genes	Relation type
ENSG00000135241	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1014112	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10215195	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10225561	0.83[CHB][hapmap]
rs10232596	0.85[YRI][hapmap];0.89[AFR][1000 genomes];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10249427	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10250374	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10256900	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10265338	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10276271	0.81[CHB][hapmap]
rs10480679	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11771516	0.90[EUR][1000 genomes]
rs17155881	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1859773	0.83[CHB][hapmap]
rs3763461	1.00[CEU][hapmap];0.95[CHB][hapmap];0.80[JPT][hapmap];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs40892	0.83[CHB][hapmap]
rs6950872	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7357276	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7802956	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9655800	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs995310	0.91[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3348839	chr7:107377311-108286538	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	91 gene(s)	inside rSNPs	diseases
2	esv2753284	chr7:108105345-108130214	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:105 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:108097200-108118000	Weak transcription	Aorta	Aorta
2	chr7:108098200-108140600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr7:108101000-108119200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr7:108102400-108129600	Weak transcription	Pancreas	Pancrea
5	chr7:108102400-108137000	Weak transcription	NH-A	brain
6	chr7:108102400-108143600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr7:108102600-108118200	Weak transcription	Fetal Muscle Leg	muscle
8	chr7:108102800-108126400	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr7:108102800-108158400	Weak transcription	HSMMtube	muscle
10	chr7:108104800-108117400	Weak transcription	Dnd41	blood
11	chr7:108105600-108117800	Weak transcription	Thymus	Thymus
12	chr7:108105800-108158000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
13	chr7:108106200-108150800	Weak transcription	NHLF	lung
14	chr7:108106400-108117200	Weak transcription	Primary T cells from cord blood	blood
15	chr7:108106600-108127600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
16	chr7:108106800-108130000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
17	chr7:108107600-108141000	Weak transcription	Spleen	Spleen
18	chr7:108108600-108122000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr7:108108800-108118200	Weak transcription	Right Ventricle	heart
20	chr7:108108800-108118600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr7:108109000-108117200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr7:108109000-108119200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
23	chr7:108109000-108126400	Weak transcription	HUVEC	blood vessel
24	chr7:108109000-108129000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
25	chr7:108109000-108136400	Weak transcription	HUES64 Cell Line	embryonic stem cell
26	chr7:108109000-108141400	Weak transcription	Cortex derived primary cultured neurospheres	brain
27	chr7:108109000-108162400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr7:108109600-108127600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
29	chr7:108109600-108140600	Weak transcription	Esophagus	oesophagus
30	chr7:108109600-108143400	Weak transcription	GM12878-XiMat	blood
31	chr7:108110000-108118000	Weak transcription	Ovary	ovary
32	chr7:108110200-108127800	Weak transcription	Fetal Brain Female	brain
33	chr7:108110800-108121000	Weak transcription	Brain Inferior Temporal Lobe	brain
34	chr7:108111000-108137800	Strong transcription	Monocytes-CD14+_RO01746	blood
35	chr7:108111200-108117600	Weak transcription	Fetal Lung	lung
36	chr7:108111400-108142200	Strong transcription	Liver	Liver
37	chr7:108111400-108154800	Weak transcription	NHEK	skin
38	chr7:108111600-108118600	Weak transcription	HMEC	breast
39	chr7:108111600-108119400	Weak transcription	HSMM	muscle
40	chr7:108111600-108138400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
41	chr7:108111600-108142600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
42	chr7:108111800-108143600	Strong transcription	Primary monocytes fromperipheralblood	blood
43	chr7:108112000-108118000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
44	chr7:108112000-108118000	Weak transcription	Lung	lung
45	chr7:108112600-108118000	Weak transcription	Fetal Intestine Small	intestine
46	chr7:108112800-108118000	Weak transcription	Brain Germinal Matrix	brain
47	chr7:108113000-108119000	Weak transcription	Brain Angular Gyrus	brain
48	chr7:108113200-108118200	Weak transcription	Brain Cingulate Gyrus	brain
49	chr7:108113200-108122200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
50	chr7:108113200-108157000	Weak transcription	Psoas Muscle	Psoas

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links