Variant report

Variant	rs11771516
Chromosome Location	chr7:108169770-108169771
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Variant related genes	Relation type
PNPLA8	TF binding region
ENSG00000177683	Chromatin interaction
ENSG00000135241	Chromatin interaction
ENSG00000128590	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1014112	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10215195	0.89[EUR][1000 genomes]
rs10215206	0.90[EUR][1000 genomes]
rs10232596	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10249427	0.87[EUR][1000 genomes]
rs10250374	0.90[EUR][1000 genomes]
rs10256900	0.90[EUR][1000 genomes]
rs10265338	0.89[EUR][1000 genomes]
rs10480679	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17155881	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs3763461	0.86[EUR][1000 genomes]
rs6950872	0.90[EUR][1000 genomes]
rs7357276	0.86[EUR][1000 genomes]
rs7802956	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9655800	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3348839	chr7:107377311-108286538	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	91 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:108167200-108170000	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr7:108167400-108173400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr7:108167600-108170000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr7:108167600-108170000	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr7:108167600-108176200	Weak transcription	Primary B cells from cord blood	blood
6	chr7:108167800-108170400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr7:108168800-108169800	Weak transcription	HMEC	breast
8	chr7:108168800-108170000	Weak transcription	Placenta	Placenta
9	chr7:108168800-108175800	Weak transcription	K562	blood
10	chr7:108169000-108170000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr7:108169600-108169800	Enhancers	iPS-18 Cell Line	embryonic stem cell
12	chr7:108169600-108170000	Enhancers	iPS-15b Cell Line	embryonic stem cell
13	chr7:108169600-108170200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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