Variant report

Variant	rs7802956
Chromosome Location	chr7:108176341-108176342
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr7:108164488..108174629-chr7:108175608..108181939,14	K562	blood:
2	chr7:108174829..108177783-chr7:108186368..108189092,2	K562	blood:
3	chr7:108172423..108174629-chr7:108175217..108177443,4	K562	blood:
4	chr7:108175375..108182018-chr7:108207477..108213332,11	K562	blood:
5	chr7:108163986..108165918-chr7:108175176..108176794,2	MCF-7	breast:
6	chr7:108174082..108182018-chr7:108207303..108212626,11	K562	blood:
7	chr7:108165819..108168153-chr7:108175715..108177570,2	MCF-7	breast:
8	chr7:108175205..108176864-chr7:108190945..108193646,2	K562	blood:
9	chr7:108175296..108178679-chr7:108201125..108203447,3	K562	blood:

No data

Variant related genes	Relation type
ENSG00000135241	Chromatin interaction
ENSG00000177683	Chromatin interaction
ENSG00000128590	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1014112	0.92[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10215195	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10215206	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10225561	0.83[CHB][hapmap]
rs10232596	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10249427	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10250374	0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10256900	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10265338	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10276271	0.81[CHB][hapmap]
rs10480679	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11771516	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17155881	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1859773	0.83[CHB][hapmap]
rs3763461	1.00[CEU][hapmap];0.95[CHB][hapmap];0.81[CHD][hapmap];0.95[GIH][hapmap];0.80[JPT][hapmap];0.94[MEX][hapmap];0.97[TSI][hapmap];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs40892	0.83[CHB][hapmap]
rs6950872	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7357276	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9655800	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.94[TSI][hapmap];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs995310	0.91[CHB][hapmap];0.81[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3348839	chr7:107377311-108286538	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	91 gene(s)	inside rSNPs	diseases
2	esv275106	chr7:108173123-108179506	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7802956	DNAJB9	cis	parietal	SCAN

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:108175800-108176600	Enhancers	K562	blood
2	chr7:108175800-108176800	Enhancers	Primary hematopoietic stem cells	blood
3	chr7:108175800-108177200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr7:108176200-108176400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr7:108176200-108176600	Enhancers	Primary B cells from cord blood	blood
6	chr7:108176200-108178800	Weak transcription	Primary B cells from peripheral blood	blood

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