Variant report

Variant	rs10480679
Chromosome Location	chr7:108164484-108164485
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr7:108163432..108166048-chr7:108192942..108195517,2	K562	blood:
2	chr7:108159403..108171484-chr7:108200740..108214365,45	K562	blood:
3	chr7:108163188..108164833-chr7:108174026..108175540,2	K562	blood:
4	chr7:108163986..108165918-chr7:108175176..108176794,2	MCF-7	breast:
5	chr7:108164038..108167949-chr7:108208349..108211666,8	MCF-7	breast:
6	chr7:108162967..108170259-chr7:108208242..108216228,25	MCF-7	breast:
7	chr7:108163136..108166047-chr7:108214620..108217426,3	K562	blood:
8	chr7:108163122..108173185-chr7:108207236..108216619,40	K562	blood:
9	chr7:108155944..108157453-chr7:108161889..108164868,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000177683	Chromatin interaction
ENSG00000128590	Chromatin interaction
ENSG00000135241	Chromatin interaction

Extended variants
information (count: 21 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1014112	1.00[ASW][hapmap];0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];0.89[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10215195	0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10215206	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10225561	0.83[CHB][hapmap]
rs10232596	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10249427	0.81[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10250374	0.86[AFR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10256900	0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10265338	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10276271	0.81[CHB][hapmap]
rs11771516	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17155881	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1859773	0.83[CHB][hapmap]
rs3763461	1.00[CEU][hapmap];0.95[CHB][hapmap];0.83[CHD][hapmap];1.00[GIH][hapmap];0.80[JPT][hapmap];0.89[MEX][hapmap];0.97[TSI][hapmap];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs40892	0.83[CHB][hapmap]
rs6950872	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7357276	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7802956	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9655800	0.92[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.94[TSI][hapmap];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs995310	0.91[CHB][hapmap];0.83[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3348839	chr7:107377311-108286538	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	91 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10480679	DNAJB9	cis	parietal	SCAN

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:108113800-108165800	Weak transcription	Gastric	stomach
2	chr7:108114000-108165000	Weak transcription	Colonic Mucosa	Colon
3	chr7:108130000-108165000	Weak transcription	Pancreas	Pancrea
4	chr7:108130800-108165000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr7:108141400-108165000	Weak transcription	Spleen	Spleen
6	chr7:108148200-108165000	Weak transcription	Fetal Stomach	stomach
7	chr7:108149400-108165600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr7:108153600-108165800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr7:108156000-108164600	Weak transcription	HUVEC	blood vessel
10	chr7:108158400-108165000	Weak transcription	Lung	lung
11	chr7:108158600-108164600	Weak transcription	HSMM	muscle
12	chr7:108158600-108164800	Weak transcription	A549	lung
13	chr7:108158600-108165000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr7:108158800-108165600	Weak transcription	Aorta	Aorta
15	chr7:108159000-108164600	Weak transcription	Fetal Kidney	kidney
16	chr7:108159000-108164800	Weak transcription	NHLF	lung
17	chr7:108159000-108165200	Weak transcription	Fetal Brain Female	brain
18	chr7:108159200-108165000	Weak transcription	Fetal Muscle Trunk	muscle
19	chr7:108160200-108164600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr7:108160600-108164800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
21	chr7:108160600-108165200	Weak transcription	HSMMtube	muscle
22	chr7:108160600-108165600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
23	chr7:108161400-108165000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
24	chr7:108161600-108165000	Enhancers	HUES64 Cell Line	embryonic stem cell
25	chr7:108161600-108165200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
26	chr7:108161600-108165200	Enhancers	Liver	Liver
27	chr7:108161600-108165200	Weak transcription	Rectal Mucosa Donor 31	rectum
28	chr7:108161800-108165200	Enhancers	Primary T helper naive cells from peripheral blood	blood
29	chr7:108162000-108165000	Weak transcription	Primary neutrophils fromperipheralblood	blood
30	chr7:108162000-108165800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
31	chr7:108162200-108165200	Enhancers	H1 Cell Line	embryonic stem cell
32	chr7:108162400-108165800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
33	chr7:108162600-108165400	Enhancers	Primary T killer memory cells from peripheral blood	blood
34	chr7:108162600-108165600	Enhancers	Primary T cells fromperipheralblood	blood
35	chr7:108162800-108164800	Enhancers	Brain Germinal Matrix	brain
36	chr7:108162800-108165000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
37	chr7:108162800-108165600	Enhancers	Primary T cells from cord blood	blood
38	chr7:108163000-108165000	Enhancers	Skeletal Muscle Female	skeletal muscle
39	chr7:108163000-108165200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
40	chr7:108163000-108165200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
41	chr7:108163000-108165200	Weak transcription	Sigmoid Colon	Sigmoid Colon
42	chr7:108163000-108165400	Enhancers	Fetal Intestine Large	intestine
43	chr7:108163000-108165600	Enhancers	Primary monocytes fromperipheralblood	blood
44	chr7:108163000-108165600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
45	chr7:108163000-108165600	Enhancers	Primary T helper cells fromperipheralblood	blood
46	chr7:108163000-108165600	Enhancers	Fetal Intestine Small	intestine
47	chr7:108163200-108164600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
48	chr7:108163200-108165000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
49	chr7:108163200-108165000	Enhancers	HUES48 Cell Line	embryonic stem cell
50	chr7:108163200-108165000	Enhancers	Primary B cells from cord blood	blood

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