Variant report

Variant	rs9655800
Chromosome Location	chr7:108140626-108140627
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:108136513..108141686-chr7:108208548..108212373,5	K562	blood:
2	chr7:108139312..108141712-chr7:108164785..108166455,2	K562	blood:
3	chr7:108139312..108141712-chr7:108164785..108167554,3	K562	blood:
4	chr7:108140209..108142096-chr7:108144749..108147683,2	MCF-7	breast:
5	chr7:108140186..108143189-chr7:108208631..108211024,3	K562	blood:

Variant related genes	Relation type
ENSG00000135241	Chromatin interaction
ENSG00000177683	Chromatin interaction
ENSG00000128590	Chromatin interaction

Extended variants
information (count: 21 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1014112	0.92[ASW][hapmap];0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.94[TSI][hapmap];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10215195	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10215206	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10225561	0.83[CHB][hapmap]
rs10232596	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10249427	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.94[TSI][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10250374	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10256900	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10265338	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10276271	0.81[CHB][hapmap]
rs10480679	0.92[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.94[TSI][hapmap];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11771516	0.89[EUR][1000 genomes]
rs17155881	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.94[TSI][hapmap];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1859773	0.83[CHB][hapmap]
rs3763461	1.00[CEU][hapmap];0.95[CHB][hapmap];0.83[CHD][hapmap];1.00[GIH][hapmap];0.80[JPT][hapmap];0.85[MEX][hapmap];0.91[TSI][hapmap];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs40892	0.83[CHB][hapmap]
rs6950872	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7357276	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7802956	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.94[TSI][hapmap];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs995310	0.91[CHB][hapmap];0.83[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3348839	chr7:107377311-108286538	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	91 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9655800	DNAJB9	cis	parietal	SCAN

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:108102400-108143600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr7:108102800-108158400	Weak transcription	HSMMtube	muscle
3	chr7:108105800-108158000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
4	chr7:108106200-108150800	Weak transcription	NHLF	lung
5	chr7:108107600-108141000	Weak transcription	Spleen	Spleen
6	chr7:108109000-108141400	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr7:108109000-108162400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr7:108109600-108143400	Weak transcription	GM12878-XiMat	blood
9	chr7:108111400-108142200	Strong transcription	Liver	Liver
10	chr7:108111400-108154800	Weak transcription	NHEK	skin
11	chr7:108111600-108142600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr7:108111800-108143600	Strong transcription	Primary monocytes fromperipheralblood	blood
13	chr7:108113200-108157000	Weak transcription	Psoas Muscle	Psoas
14	chr7:108113800-108150800	Weak transcription	Pancreatic Islets	Pancreatic Islet
15	chr7:108113800-108165800	Weak transcription	Gastric	stomach
16	chr7:108114000-108165000	Weak transcription	Colonic Mucosa	Colon
17	chr7:108114400-108160000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
18	chr7:108115200-108151800	Weak transcription	NHDF-Ad	bronchial
19	chr7:108116400-108141400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
20	chr7:108117200-108150600	Weak transcription	Colon Smooth Muscle	Colon
21	chr7:108117200-108151800	Weak transcription	HUES48 Cell Line	embryonic stem cell
22	chr7:108117800-108164200	Weak transcription	Placenta Amnion	Placenta Amnion
23	chr7:108119200-108157600	Weak transcription	Brain Germinal Matrix	brain
24	chr7:108119800-108144200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
25	chr7:108119800-108144200	Weak transcription	Small Intestine	intestine
26	chr7:108119800-108151000	Weak transcription	Fetal Kidney	kidney
27	chr7:108119800-108151800	Weak transcription	Thymus	Thymus
28	chr7:108119800-108151800	Weak transcription	HMEC	breast
29	chr7:108119800-108154800	Weak transcription	Skeletal Muscle Male	skeletal muscle
30	chr7:108119800-108158200	Weak transcription	Aorta	Aorta
31	chr7:108121600-108158200	Weak transcription	Rectal Smooth Muscle	rectum
32	chr7:108122000-108141200	Weak transcription	Fetal Muscle Trunk	muscle
33	chr7:108122000-108144200	Weak transcription	Fetal Brain Male	brain
34	chr7:108122200-108141400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
35	chr7:108123400-108144800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
36	chr7:108128000-108141600	Weak transcription	Fetal Brain Female	brain
37	chr7:108128200-108158000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
38	chr7:108130000-108141000	Weak transcription	Fetal Stomach	stomach
39	chr7:108130000-108141400	Weak transcription	Fetal Lung	lung
40	chr7:108130000-108165000	Weak transcription	Pancreas	Pancrea
41	chr7:108130200-108141200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
42	chr7:108130200-108162000	Weak transcription	Hela-S3	cervix
43	chr7:108130600-108141200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
44	chr7:108130800-108165000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
45	chr7:108131000-108141400	Weak transcription	H1 Cell Line	embryonic stem cell
46	chr7:108131600-108141000	Weak transcription	Fetal Intestine Small	intestine
47	chr7:108132200-108141000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
48	chr7:108132400-108151000	Weak transcription	HUES6 Cell Line	embryonic stem cell
49	chr7:108132800-108158400	Weak transcription	A549	lung
50	chr7:108133600-108154800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood

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