Variant report

Variant	rs10223678
Chromosome Location	chr6:166666913-166666914
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:166659048..166660620-chr6:166666870..166668556,2	K562	blood:
2	chr6:166659048..166661337-chr6:166666386..166668556,3	K562	blood:
3	chr6:166664955..166667590-chr6:166668357..166669935,2	K562	blood:

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10946138	0.82[ASN][1000 genomes]
rs10946140	0.82[ASN][1000 genomes]
rs10946141	0.82[ASN][1000 genomes]
rs1884958	0.82[ASN][1000 genomes]
rs1884959	0.84[ASN][1000 genomes]
rs1884960	0.82[ASN][1000 genomes]
rs1884961	0.82[ASN][1000 genomes]
rs2064880	0.84[ASN][1000 genomes]
rs35173009	0.82[ASN][1000 genomes]
rs4709107	0.87[ASN][1000 genomes]
rs4710029	0.87[ASN][1000 genomes]
rs6456063	0.82[ASN][1000 genomes]
rs6456064	0.82[ASN][1000 genomes]
rs6456065	0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs6900299	0.84[ASN][1000 genomes]
rs6901921	0.84[ASN][1000 genomes]
rs6909730	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6916613	0.82[ASN][1000 genomes]
rs6924775	0.84[EUR][1000 genomes]
rs6940605	0.84[ASN][1000 genomes]
rs7740044	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7741146	0.82[ASN][1000 genomes]
rs7741297	0.82[ASN][1000 genomes]
rs7741819	0.82[ASN][1000 genomes]
rs7765783	0.82[ASN][1000 genomes]
rs7766299	0.82[ASN][1000 genomes]
rs9348100	0.82[ASN][1000 genomes]
rs9365973	0.84[ASN][1000 genomes]
rs9365980	0.83[AMR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029993	chr6:166621852-166695791	Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv538537	chr6:166621852-166695791	Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv886934	chr6:166642850-166747572	Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:104 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:166663600-166669200	Enhancers	Dnd41	blood
2	chr6:166666000-166667000	Bivalent Enhancer	Placenta	Placenta
3	chr6:166666200-166667600	Bivalent/Poised TSS	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr6:166666400-166667000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
5	chr6:166666400-166667000	Bivalent/Poised TSS	Brain Germinal Matrix	brain
6	chr6:166666400-166667600	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
7	chr6:166666400-166667600	Flanking Bivalent TSS/Enh	Primary T regulatory cells fromperipheralblood	blood
8	chr6:166666400-166667600	Enhancers	Spleen	Spleen
9	chr6:166666400-166667800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr6:166666400-166668000	Flanking Active TSS	Primary hematopoietic stem cells	blood
11	chr6:166666600-166667000	Bivalent/Poised TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr6:166666600-166667000	Bivalent/Poised TSS	Primary T helper cells PMA-I stimulated	--
13	chr6:166666600-166667000	Bivalent/Poised TSS	Primary T killer naive cells fromperipheralblood	blood
14	chr6:166666600-166667000	Bivalent/Poised TSS	Muscle Satellite Cultured Cells	--
15	chr6:166666600-166667000	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr6:166666600-166667000	Active TSS	Pancreatic Islets	Pancreatic Islet
17	chr6:166666600-166667000	Bivalent Enhancer	Fetal Muscle Leg	muscle
18	chr6:166666600-166667000	Bivalent/Poised TSS	Rectal Mucosa Donor 29	rectum
19	chr6:166666600-166667000	Bivalent/Poised TSS	HUVEC	blood vessel
20	chr6:166666600-166667200	Flanking Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr6:166666600-166667200	Flanking Bivalent TSS/Enh	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr6:166666600-166667200	Active TSS	Primary T cells from cord blood	blood
23	chr6:166666600-166667200	Bivalent/Poised TSS	Primary T helper memory cells from peripheral blood 2	blood
24	chr6:166666600-166667200	Flanking Bivalent TSS/Enh	Cortex derived primary cultured neurospheres	brain
25	chr6:166666600-166667200	Flanking Bivalent TSS/Enh	Adipose Nuclei	Adipose
26	chr6:166666600-166667200	Active TSS	Brain Anterior Caudate	brain
27	chr6:166666600-166667200	Active TSS	Brain Cingulate Gyrus	brain
28	chr6:166666600-166667200	Active TSS	Duodenum Mucosa	Duodenum
29	chr6:166666600-166667200	Active TSS	A549	lung
30	chr6:166666600-166667400	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
31	chr6:166666600-166667400	Bivalent/Poised TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr6:166666600-166667400	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
33	chr6:166666600-166667400	Bivalent/Poised TSS	Primary T helper naive cells from peripheral blood	blood
34	chr6:166666600-166667400	Bivalent/Poised TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr6:166666600-166667400	Active TSS	Brain Hippocampus Middle	brain
36	chr6:166666600-166667400	Flanking Bivalent TSS/Enh	Fetal Stomach	stomach
37	chr6:166666600-166667600	Bivalent/Poised TSS	ES-WA7 Cell Line	embryonic stem cell
38	chr6:166666600-166667600	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
39	chr6:166666600-166667600	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
40	chr6:166666600-166667600	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
41	chr6:166666600-166667600	Bivalent/Poised TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr6:166666600-166667600	Flanking Bivalent TSS/Enh	Primary B cells from peripheral blood	blood
43	chr6:166666600-166667600	Flanking Bivalent TSS/Enh	Primary T cells fromperipheralblood	blood
44	chr6:166666600-166667600	Flanking Bivalent TSS/Enh	Ganglion Eminence derived primary cultured neurospheres	brain
45	chr6:166666600-166667600	Flanking Bivalent TSS/Enh	Foreskin Melanocyte Primary Cells skin03	Skin
46	chr6:166666600-166667600	Bivalent/Poised TSS	Primary mononuclear cells fromperipheralblood	Blood
47	chr6:166666600-166667600	Bivalent/Poised TSS	Brain Inferior Temporal Lobe	brain
48	chr6:166666600-166667600	Bivalent/Poised TSS	Psoas Muscle	Psoas
49	chr6:166666600-166667600	Bivalent/Poised TSS	Rectal Smooth Muscle	rectum
50	chr6:166666600-166667600	Flanking Active TSS	Thymus	Thymus

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