Variant report

Variant	rs9365980
Chromosome Location	chr6:166661420-166661421
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:166657165..166659175-chr6:166659836..166662538,2	K562	blood:
2	chr6:166653109..166655486-chr6:166658907..166661895,2	K562	blood:

Variant related genes	Relation type
ENSG00000213536	Chromatin interaction

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10223678	0.83[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs10946138	0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs10946140	0.84[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs10946141	0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs1884958	0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs1884959	0.84[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs1884960	0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs1884961	0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs2064880	0.82[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs35173009	0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs4709107	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4710029	0.97[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6456063	0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs6456064	0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs6456065	0.91[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs6900299	0.97[ASN][1000 genomes]
rs6901921	0.82[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs6909730	0.84[ASN][1000 genomes]
rs6916613	0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs6940605	0.82[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs7740044	0.89[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs7741146	0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs7741297	0.88[ASN][1000 genomes]
rs7741819	0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs7761808	1.00[YRI][hapmap]
rs7765783	0.88[ASN][1000 genomes]
rs7766299	0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs9348100	0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs9356448	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs9365973	0.83[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];0.85[GIH][hapmap];0.82[MEX][hapmap];0.84[AMR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029993	chr6:166621852-166695791	Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv538537	chr6:166621852-166695791	Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv886934	chr6:166642850-166747572	Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:166655200-166666400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr6:166658400-166666400	Weak transcription	Monocytes-CD14+_RO01746	blood
3	chr6:166658600-166661600	Enhancers	Dnd41	blood
4	chr6:166658800-166664200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
5	chr6:166659000-166664200	Weak transcription	Primary hematopoietic stem cells	blood
6	chr6:166659000-166664200	Weak transcription	Fetal Thymus	thymus
7	chr6:166659000-166664800	Weak transcription	Primary T cells from cord blood	blood
8	chr6:166660800-166665000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
9	chr6:166661000-166665000	Weak transcription	Thymus	Thymus

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