Variant report

Variant	rs6909730
Chromosome Location	chr6:166675384-166675385
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10223678	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1884959	0.81[ASN][1000 genomes]
rs2064880	0.81[ASN][1000 genomes]
rs4709107	0.84[ASN][1000 genomes]
rs4710029	0.84[ASN][1000 genomes]
rs6456065	0.82[ASN][1000 genomes]
rs6900299	0.81[ASN][1000 genomes]
rs6901921	0.81[ASN][1000 genomes]
rs6924775	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6940605	0.81[ASN][1000 genomes]
rs7740044	0.82[ASN][1000 genomes]
rs9365973	1.00[CHB][hapmap];0.83[CHD][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs9365980	1.00[CHB][hapmap];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029993	chr6:166621852-166695791	Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv538537	chr6:166621852-166695791	Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv886934	chr6:166642850-166747572	Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6909730	TCTE3	cis	parietal	SCAN

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:166673200-166679000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr6:166673400-166676600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr6:166673600-166678600	Weak transcription	Right Atrium	heart
4	chr6:166674000-166677400	Enhancers	Primary neutrophils fromperipheralblood	blood
5	chr6:166674200-166675400	Weak transcription	Primary B cells from cord blood	blood
6	chr6:166674200-166675400	Weak transcription	Primary hematopoietic stem cells	blood
7	chr6:166674200-166676400	Weak transcription	Primary monocytes fromperipheralblood	blood
8	chr6:166674200-166676400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
9	chr6:166674200-166676400	Weak transcription	Monocytes-CD14+_RO01746	blood
10	chr6:166674400-166675400	Weak transcription	Dnd41	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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